GTEX-15EOM
|
21-40
|
Female
|
GTEX-15EOM-1726 |
Vagina
|
PAXgene |
1
|
2 pieces; bladder, not vagina
|
Unacceptable
|
|
GTEX-15EOM
|
21-40
|
Female
|
GTEX-15EOM-2226 |
Ileum
|
PAXgene |
2
|
6 pieces; full thickness sections, no significant lymphoid tissue
|
Unacceptable
|
|
GTEX-15EOM
|
21-40
|
Female
|
GTEX-15EOM-2426 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; full thickness (mucosa not target), chronic colitis
|
Unacceptable
|
|
GTEX-15ETS
|
41-50
|
Female
|
GTEX-15ETS-1026 |
Coronary artery
|
PAXgene |
1
|
2 pieces, no artery, venous/adipose/connective tissues
|
Unacceptable
|
|
GTEX-15ETS
|
41-50
|
Female
|
GTEX-15ETS-2526 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces fat/fascia, unknown provenance, not GTEx target
|
Unacceptable
|
|
GTEX-15EU6
|
51-60
|
Male
|
GTEX-15EU6-0226 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces, 90% medulla, trace cortex (delineated)--not sufficient glomeruli to qualify as target cortex
|
Unacceptable
|
|
GTEX-15F5U
|
41-50
|
Male
|
GTEX-15F5U-1326 |
Ileum
|
PAXgene |
1
|
4 pieces; samples contain several small lymphoid follicles [circled] but too much full thickness ileal muscularis. LCM
|
Unacceptable
|
|
GTEX-15FZZ
|
21-40
|
Female
|
GTEX-15FZZ-0926 |
Vagina
|
PAXgene |
0
|
6 pieces: 3 are vagina, 3 are endocervix; LCM
|
Unacceptable
|
|
GTEX-15FZZ
|
21-40
|
Female
|
GTEX-15FZZ-1426 |
Stomach
|
PAXgene |
1
|
6 pieces; no mucosa, only muscularis and submucosa; 1 has only submucosa; LCM
|
Unacceptable
|
|
GTEX-15FZZ
|
21-40
|
Female
|
GTEX-15FZZ-1626 |
Ileum
|
PAXgene |
1
|
6 pieces; full thickness of wall (not target) and minimal lymphoid tissue [circled] LCM
|
Unacceptable
|
|
GTEX-15G19
|
61-70
|
Male
|
GTEX-15G19-0826 |
Coronary artery
|
PAXgene |
1
|
2 pieces; 1 piece is vascular wall, second is moderately autolyzed fibroadipose tissue in this section
|
Unacceptable
|
|
GTEX-15G19
|
61-70
|
Male
|
GTEX-15G19-2626 |
Ileum
|
PAXgene |
3
|
4 pieces; totally autolyzed mucosa and no evidence of target lymphoid aggregates, fragments of muscularis (not target)
|
Unacceptable
|
|
GTEX-15RIE
|
61-70
|
Male
|
GTEX-15RIE-0226 |
Pancreas
|
PAXgene |
1
|
2 pieces, not pancreas; lymph nodes and fat
|
Unacceptable
|
|
GTEX-15RIE
|
61-70
|
Male
|
GTEX-15RIE-0926 |
Ileum
|
PAXgene |
1
|
6 pieces, colinic mucosa, only trace target lymphoid aggregates
|
Unacceptable
|
|
GTEX-15RIF
|
21-40
|
Male
|
GTEX-15RIF-1226 |
Ileum
|
PAXgene |
1
|
4 pieces, well fixed mucosa but too few lymphoid aggegates to justify analysis
|
Unacceptable
|
|
GTEX-15RJ7
|
41-50
|
Male
|
GTEX-15RJ7-0426 |
Atrial appendage
|
PAXgene |
0
|
2 pieces; one contains over 60% fat and fibrous tissue
|
Unacceptable
|
|
GTEX-15RJ7
|
41-50
|
Male
|
GTEX-15RJ7-1126 |
Stomach
|
PAXgene |
2
|
6 pieces; muscularis and submucosa only (full thickness sections preferred with trimming of muscularis as necessary)
|
Unacceptable
|
|
GTEX-15RJ7
|
41-50
|
Male
|
GTEX-15RJ7-1326 |
Ileum
|
PAXgene |
1
|
6 pieces; scattered lymphoid aggregates outlined, mucosa focally mildly autolyzed, one piece includes muscularis
|
Unacceptable
|
|
GTEX-15RJE
|
41-50
|
Male
|
GTEX-15RJE-0326 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces: 1 has minute focus of atrophic muscle fibers comprising <1% of a largely adipose section [marked]; other piece is all fat
|
Unacceptable
|
|
GTEX-15RJE
|
41-50
|
Male
|
GTEX-15RJE-0426 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces: >90% fat; several nerve fibers marked
|
Unacceptable
|
|
GTEX-15RJE
|
41-50
|
Male
|
GTEX-15RJE-0826 |
Coronary artery
|
PAXgene |
1
|
2 pieces; 1 piece is 75% external fat; other is 95% external fat
|
Unacceptable
|
|
GTEX-15RJE
|
41-50
|
Male
|
GTEX-15RJE-1226 |
Esophagus - muscularis
|
PAXgene |
0
|
6 pieces; all contain skeletal muscle [marked] up to 20% of content; samples taken too proximal; LCM
|
Unacceptable
|
|
GTEX-15RJE
|
41-50
|
Male
|
GTEX-15RJE-1626 |
Stomach
|
PAXgene |
3
|
6 pieces;mucosa too autolyzed for further study; no muscularis
|
Unacceptable
|
|
GTEX-15RJE
|
41-50
|
Male
|
GTEX-15RJE-1926 |
Ileum
|
PAXgene |
1
|
6 pieces; all contain abundant mucosal-submucosal target lymphoid tissue beneath sloughed epithelium, but all contain non-target full thickness muscularis propria; needs LCM for analysis
|
Unacceptable
|
|
GTEX-15RJE
|
41-50
|
Male
|
GTEX-15RJE-2126 |
Adrenal glands
|
PAXgene |
2
|
2 pieces; 80% fat
|
Unacceptable
|
|