GTEX-1H11D
|
41-50
|
Male
|
GTEX-1H11D-2526 |
Ileum
|
PAXgene |
1
|
6 pieces; several include significant lymphoid tissue, few strips of residual musculairs
|
Acceptable
|
|
GTEX-1H1DE
|
21-40
|
Male
|
GTEX-1H1DE-1426 |
Ileum
|
PAXgene |
3
|
6 pieces, glandular mucosa completely autolyzed, target lymphoid aggregates are ~10-20% tissue
|
Acceptable
|
|
GTEX-1H1DF
|
41-50
|
Female
|
GTEX-1H1DF-2626 |
Ileum
|
PAXgene |
3
|
6 pieces; autolyzed and without lymphoid tissue
|
Unacceptable
|
|
GTEX-1H1DG
|
61-70
|
Male
|
GTEX-1H1DG-2526 |
Ileum
|
PAXgene |
3
|
4 pieces, insufficient target lymphoid aggregates, correct target
|
Unacceptable
|
|
GTEX-1H1E6
|
21-40
|
Male
|
GTEX-1H1E6-0126 |
Ileum
|
PAXgene |
0
|
6 pieces; well preserved mucosa/submucosa with scattered lymphoid tissue, insufficient for analysis
|
Unacceptable
|
|
GTEX-1H1ZS
|
61-70
|
Male
|
GTEX-1H1ZS-2526 |
Ileum
|
PAXgene |
3
|
4 pieces, advanced mucosal autolysis; residual target lymphoid aggregates are ~20% of residual tissue
|
Acceptable
|
|
GTEX-1H23P
|
61-70
|
Male
|
GTEX-1H23P-2526 |
Ileum
|
PAXgene |
3
|
4 pieces; only small amounts of lymphoid tissue; severe autolysis
|
Unacceptable
|
|
GTEX-1H2FU
|
61-70
|
Female
|
GTEX-1H2FU-2926 |
Ileum
|
PAXgene |
2
|
4 pieces; largely autolyzed mucosa, few fragments of muscularis, and only scattered lymphoid aggregates
|
Unacceptable
|
|
GTEX-1H3NZ
|
61-70
|
Male
|
GTEX-1H3NZ-2426 |
Ileum
|
PAXgene |
2
|
5 pieces; several lymphoid nodules (labeled) with background of autolyzed mucosa. LCM
|
Acceptable
|
|
GTEX-1H3VE
|
41-50
|
Male
|
GTEX-1H3VE-2526 |
Ileum
|
PAXgene |
3
|
6 pieces; epithelium totally autolyzed and ~5% tissue is residual lymphoid aggregates (outlined), muscularis (not target) also present
|
Unacceptable
|
|
GTEX-1H3VY
|
51-60
|
Male
|
GTEX-1H3VY-2826 |
Ileum
|
PAXgene |
2
|
6 pieces; full thickness sections (muscularis not target) with partially autolyzed mucosa, rare lymphoid aggregate
|
Unacceptable
|
|
GTEX-1H4P4
|
51-60
|
Male
|
GTEX-1H4P4-1726 |
Ileum
|
PAXgene |
3
|
6 pieces; full thickness (muscularis not target), autolyzed
|
Unacceptable
|
|
GTEX-1HB9E
|
51-60
|
Male
|
GTEX-1HB9E-2326 |
Ileum
|
PAXgene |
1
|
6 pieces, trace mucosa, no target lymphoid aggregates
|
Unacceptable
|
|
GTEX-1HBPH
|
41-50
|
Female
|
GTEX-1HBPH-2426 |
Ileum
|
PAXgene |
2
|
5 pieces; plentiful lymphoid tissue in a background of largely autolyzed mucosa & submucosa
|
Acceptable
|
|
GTEX-1HBPI
|
41-50
|
Male
|
GTEX-1HBPI-2326 |
Ileum
|
PAXgene |
2
|
6 pieces; well dissected partly autolyzed, but abundant lymphoid tissue with small amount of muscularis propria
|
Acceptable
|
|
GTEX-1HBPM
|
61-70
|
Female
|
GTEX-1HBPM-2526 |
Ileum
|
PAXgene |
2
|
5 pieces; autolyzed mucosa with scattered residual lymphoid aggregates, small focus of muscularis (not target)
|
Unacceptable
|
|
GTEX-1HBPN
|
51-60
|
Male
|
GTEX-1HBPN-1926 |
Ileum
|
PAXgene |
1
|
6 pieces, ~15% target lymphoid aggregates, rep delineated
|
Acceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-2126 |
Ileum
|
PAXgene |
1
|
6 pieces; all have muscularis, no lymphoid tissue
|
Unacceptable
|
|
GTEX-1HCU6
|
61-70
|
Female
|
GTEX-1HCU6-2626 |
Ileum
|
PAXgene |
3
|
4 pieces; totally autolyzed; no visible lymphoid nodules
|
Unacceptable
|
|
GTEX-1HCU7
|
51-60
|
Male
|
GTEX-1HCU7-2526 |
Ileum
|
PAXgene |
2
|
6 pieces; colon (full thickness) not ileum
|
Unacceptable
|
|
GTEX-1HCU8
|
61-70
|
Female
|
GTEX-1HCU8-2826 |
Ileum
|
PAXgene |
3
|
4 pieces, glandular mucosa totallly autolyzed; target lymphoid aggregates are ~20% of residual tissue, rep. delineated.
|
Acceptable
|
|
GTEX-1HCU9
|
21-40
|
Male
|
GTEX-1HCU9-1226 |
Ileum
|
PAXgene |
1
|
6 pieces; well preserved lymphoid nodules (circled) full thickness samples with excessive muscularis; LCM
|
Unacceptable
|
|
GTEX-1HCUA
|
51-60
|
Female
|
GTEX-1HCUA-1726 |
Ileum
|
PAXgene |
1
|
6 pieces; good lymphoid component, small portion of residual muscularis in 3 of 6 pieces
|
Acceptable
|
|
GTEX-1HCVE
|
51-60
|
Male
|
GTEX-1HCVE-2426 |
Ileum
|
PAXgene |
3
|
4 pieces, advanced autolysis; correct site but insufficient target lymphoid aggregates (<5%)
|
Unacceptable
|
|
GTEX-1HFI6
|
41-50
|
Male
|
GTEX-1HFI6-2526 |
Ileum
|
PAXgene |
3
|
6 pieces, No target lymphoid aggregates, ~70% muscularis/adipose tissue
|
Unacceptable
|
|