GTEX-1F75I
|
41-50
|
Male
|
GTEX-1F75I-2526 |
Ileum
|
PAXgene |
2
|
6 pieces; moderately and focally severely autolyzed mucosa; well representaion of target lymphoid aggregates
|
Acceptable
|
|
GTEX-1F75W
|
61-70
|
Male
|
GTEX-1F75W-2326 |
Ileum
|
PAXgene |
1
|
6 pieces; several lymphoid-rich areas [outlined]
|
Acceptable
|
|
GTEX-1F88E
|
61-70
|
Female
|
GTEX-1F88E-2626 |
Ileum
|
PAXgene |
3
|
4 pieces. glandular mucosa completely autolyzed/sloughed; insufficient residual lymphoid aggregates to warrant attempted molecular analysis
|
Unacceptable
|
|
GTEX-1F88F
|
61-70
|
Female
|
GTEX-1F88F-1826 |
Ileum
|
PAXgene |
3
|
6 pieces; autolyzed mucosa and lymphoid tissue; muscularis present
|
Unacceptable
|
|
GTEX-1FIGZ
|
41-50
|
Male
|
GTEX-1FIGZ-1026 |
Ileum
|
PAXgene |
1
|
6 pieces; full thickness colon, not ileum
|
Unacceptable
|
|
GTEX-1GF9U
|
41-50
|
Female
|
GTEX-1GF9U-1426 |
Ileum
|
PAXgene |
1
|
5 pieces; predominantly mucosa with rare lymphoid follicle
|
Unacceptable
|
|
GTEX-1GF9V
|
61-70
|
Male
|
GTEX-1GF9V-2826 |
Ileum
|
PAXgene |
2
|
6 pieces, glandular mucosa autolyzed; residual target lymphoid aggregates are ~40% remaining tissue; rep delineated
|
Acceptable
|
|
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-2326 |
Ileum
|
PAXgene |
2
|
6 pieces; predominantly autolyzed mucosa with some residual target lymphoid aggregates (< 20% of tissue)
|
Unacceptable
|
|
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-1626 |
Ileum
|
PAXgene |
1
|
6 pieces; well dissected but only 1 lymphoid nodule; LCM
|
Unacceptable
|
|
GTEX-1GL5R
|
51-60
|
Male
|
GTEX-1GL5R-2026 |
Ileum
|
PAXgene |
1
|
6 pieces; well trimmed with significant lymphoid component
|
Acceptable
|
|
GTEX-1GMR2
|
51-60
|
Male
|
GTEX-1GMR2-1026 |
Ileum
|
PAXgene |
1
|
6 pieces; several lymphoid nodules in well preserved mucosa
|
Acceptable
|
|
GTEX-1GMR3
|
21-40
|
Male
|
GTEX-1GMR3-2726 |
Ileum
|
PAXgene |
1
|
6 pieces, abundant lymphoid aggregates are ~60-70% of tissue
|
Acceptable
|
|
GTEX-1GMR8
|
51-60
|
Female
|
GTEX-1GMR8-2726 |
Ileum
|
PAXgene |
2
|
6 pieces; mucosa autolyzed but thin layer of lymphoid cells present on all pieces
|
Acceptable
|
|
GTEX-1GMRU
|
51-60
|
Male
|
GTEX-1GMRU-2726 |
Ileum
|
PAXgene |
3
|
6 pieces, glandular mucosa autolyzed, ~20% residual target lymphoid aggregates
|
Acceptable
|
|
GTEX-1GN1U
|
51-60
|
Female
|
GTEX-1GN1U-2826 |
Ileum
|
PAXgene |
2
|
4 pieces, no target lymphoid aggregates
|
Unacceptable
|
|
GTEX-1GN1V
|
61-70
|
Male
|
GTEX-1GN1V-2426 |
Ileum
|
PAXgene |
3
|
5 pieces; autolyzed, also includes muscularis (not target)
|
Unacceptable
|
|
GTEX-1GN1W
|
51-60
|
Female
|
GTEX-1GN1W-1826 |
Ileum
|
PAXgene |
3
|
5 pieces; excessive autolysis of lymphoid tissue; muscularis propria in 4 of 5 pieces
|
Unacceptable
|
|
GTEX-1GN2E
|
61-70
|
Male
|
GTEX-1GN2E-2526 |
Ileum
|
PAXgene |
2
|
6 pieces, glandular mucosa with advanced autolysis; target lymphoid aggregates are ~20% residual tissue
|
Acceptable
|
|
GTEX-1GN73
|
61-70
|
Male
|
GTEX-1GN73-2526 |
Ileum
|
PAXgene |
2
|
6 pieces; partly autolyzed, but plentiful lymphoid tissue; variable amounts of muscularis propria in 4 pieces
|
Acceptable
|
|
GTEX-1GPI7
|
21-40
|
Male
|
GTEX-1GPI7-2026 |
Ileum
|
PAXgene |
1
|
6 pieces; full thickness sections with residual attached fat, several good lymphoid follicles in 2 of 6 pieces
|
Unacceptable
|
|
GTEX-1GTWX
|
61-70
|
Male
|
GTEX-1GTWX-2426 |
Ileum
|
PAXgene |
3
|
6 pieces,; insufficient lymphoid aggregates for analysis in correct target
|
Unacceptable
|
|
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-1926 |
Ileum
|
PAXgene |
3
|
6 pieces; severe autolysis of mucosa, muscularis (not target) is better preserved, lack of target lymphoid aggregates
|
Unacceptable
|
|
GTEX-1GZ4H
|
41-50
|
Female
|
GTEX-1GZ4H-1126 |
Ileum
|
PAXgene |
1
|
6 pieces; only 1 piece has lymphoid tissue; remainder are all muscularis propria; LCM
|
Unacceptable
|
|
GTEX-1GZ4I
|
51-60
|
Male
|
GTEX-1GZ4I-2026 |
Ileum
|
PAXgene |
2
|
5 pieces; abundant lymphoid tissue with equal amounts of autolyzed ileum
|
Acceptable
|
|
GTEX-1GZHY
|
51-60
|
Female
|
GTEX-1GZHY-2826 |
Ileum
|
PAXgene |
3
|
6 pieces, ~20% residual target lymphoid aggregates, glandular elements autolyszed/sloughed
|
Acceptable
|
|