GTEX-XOT4
|
61-70
|
Female
|
GTEX-XOT4-1426 |
Lung
|
PAXgene |
2
|
2 pieces. 8x6.5 & 7x6mm; heart failure cells
|
Acceptable
|
|
GTEX-XOT4
|
61-70
|
Female
|
GTEX-XOT4-1626 |
Adrenal glands
|
PAXgene |
2
|
2 pieces. 8x6 & 8x7mm; smaller piece has 2.5x 1.5 mm and 3 x0.8 mm external adipose
|
Acceptable
|
|
GTEX-XOT4
|
61-70
|
Female
|
GTEX-XOT4-1926 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces. up to 5.5x2mm; superficially sloughed epithelium
|
Acceptable
|
|
GTEX-XOT4
|
61-70
|
Female
|
GTEX-XOT4-2026 |
Esophagus - muscularis
|
PAXgene |
2
|
6 pieces. up to 8x3.5mm; well dissected muscle
|
Acceptable
|
|
GTEX-XOT4
|
61-70
|
Female
|
GTEX-XOT4-2126 |
Gastroesophageal junction
|
PAXgene |
2
|
6 pieces. up to 6.5x5mm; muscle and submucosa with fibrovascular stroma in 2 pieces up to 2mm in diameter (marked)
|
Acceptable
|
|
GTEX-XOT4
|
61-70
|
Female
|
GTEX-XOT4-2526 |
Ileum
|
PAXgene |
2
|
4 pieces, up to 4x2mm; lymphoid tissue = 2; mucosa = 3; lymphoid tissue in all pieces (marked)
|
Acceptable
|
|
GTEX-XOT4
|
61-70
|
Female
|
GTEX-XOT4-2626 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, up to 6x2mm; well dissected muscle
|
Acceptable
|
|
GTEX-XOT4
|
61-70
|
Female
|
GTEX-XOT4-2826 |
Uterus
|
PAXgene |
2
|
2 pieces. 8x7 & 9x8mm; glands=2; muscle = 1; small focus of glands in 1 piece (marked)
|
Acceptable
|
|
GTEX-XOT4
|
61-70
|
Female
|
GTEX-XOT4-2926 |
Vagina
|
PAXgene |
2
|
6 pieces. up to 8x3mm; atrophic epithelium =2; wall = 1
|
Acceptable
|
|
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-0626 |
Testis
|
PAXgene |
2
|
2 pieces. 7x5 & 9x7mm; spermatogenesiis present but poorly preserved
|
Acceptable
|
|
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-1126 |
Pancreas
|
PAXgene |
2
|
2 pieces. 9x8 & 11x7.5mm; moderate-severe saponification. Islets poorly seen; a few encircled
|
Acceptable
|
|
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-1526 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces. up to 7x2.5mm glomeruli well visualized
|
Acceptable
|
|
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-1626 |
Lung
|
PAXgene |
2
|
2 pieces. 7.5x7 & 10x7mm; patchy fibrinous alveolar deposits, aggregated of pigmented histiocytes present, either smoking or industrial exposure related
|
Acceptable
|
|
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-2826 |
Prostate
|
PAXgene |
2
|
2 pieces. 8.5x8 & 10x8mm; glands moderately autolyzed; one better preserved (~grade 1) area delineated
|
Acceptable
|
|
GTEX-XPVG
|
51-60
|
Male
|
GTEX-XPVG-1926 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, up to 8x5mm; all have mucosa (autolysis=3) not target; 3 have (target) muscularis (autolysis=2)
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-0926 |
Lung
|
PAXgene |
2
|
2 pieces, 8x7 & 8x6mm; mild congestion
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-1726 |
Adrenal glands
|
PAXgene |
2
|
2 pieces, 11x4 & 12x5mm; all cortex, discontinuous rim of adherent fat on both, up to ~0.5-1mm thick, delineated
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-1926 |
Pancreas
|
PAXgene |
2
|
2 pieces, 8x8 & 9x7mm; moderate saponification, some Islets visible, rep. ones delineated
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2026 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces, up to 8x4mm; glomeruli visible
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2126 |
Liver
|
PAXgene |
2
|
2 pieces, 9x7 & 9x9mm; no steatosis
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2326 |
Stomach
|
PAXgene |
2
|
6 pieces, up to 9x2mm; mucosa prservation ranges from score 1 to score 2 ~30--40% thickness
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2526 |
Prostate
|
PAXgene |
2
|
2 pieces, 8x7 & 10x9mm; all stroma
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2726 |
Testis
|
PAXgene |
2
|
2 pieces, 6x5 & 7x4.5mm; spermatogenesis is present; badly autolyzed
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-2226 |
Ileum
|
PAXgene |
2
|
6 pieces, up to 6x3mm; lymphoid=2; mucosa=3; well dissected; lymphoid nodules annotated
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-2526 |
Prostate
|
PAXgene |
2
|
2 pieces, 8x7 & 9x7mm; Glands=3; stroma=1. 1 piece is all fibromuscular tissue, no glands; other piece has glands as well as stroma
|
Acceptable
|
|