GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1126 |
Mammary tissue (breast)
|
PAXgene |
2
|
2 pieces, 10x8 & 10x8mm; rare ductal elements, delineated, gynecomastoid features (stromal)
|
Acceptable
|
 |
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1226 |
Pancreas
|
PAXgene |
2
|
2 pieces, 9x9 & 9x8mm; diffuse saponificaiton, Islets not well seen
|
Acceptable
|
 |
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1326 |
Adrenal glands
|
PAXgene |
2
|
2 pieces, 12x4 & 11x3mm; all cortex, generally clean, one ahderent nubbin of fat, ~1mm, delineated, on one aliquot
|
Acceptable
|
 |
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1426 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces, up to 7x3mm; diffuse chronic nephritis with 'thyroidization', foci of papillary neoplasm in 2 sections suspcious for papillary renal cell carcinoma.
|
Unacceptable
|
 |
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1526 |
Testis
|
PAXgene |
2
|
2 pieces, 8.5x7 & 7x7mm; badly autolyzed tubules
|
Acceptable
|
 |
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1826 |
Lung
|
PAXgene |
2
|
2 pieces, 8x7 & 8x7mm; diffuse hemorrhagic pneumonitis obliterates normal architecture, poorly preserved
|
Acceptable
|
 |
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1926 |
Aorta
|
PAXgene |
2
|
6 pieces, up to 8x2mm;
|
Acceptable
|
 |
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-2026 |
Atrial appendage
|
PAXgene |
2
|
2 pieces, 9x8 & 8x8mm;
|
Acceptable
|
 |
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-2326 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces, up to 7.5x3mm; squamous mucosa poorly preserved and sloughing, ~10% thickness where present
|
Acceptable
|
 |
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-3126 |
Pituitary gland
|
PAXgene |
2
|
1 piece, 9x5mm; all adenohypophysis, not well preserved
|
Acceptable
|
 |
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-0726 |
Thyroid gland
|
PAXgene |
2
|
2 pieces 9.5x7 & 8x8mm;
|
Acceptable
|
 |
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1126 |
Atrial appendage
|
PAXgene |
2
|
2 pieces 10.5x7 & 10x7mm;
|
Acceptable
|
 |
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1226 |
Heart
|
PAXgene |
2
|
2 pieces 9x6.5 & 8x6.5mm; poorly preserved, apparent fibrotic focus
|
Acceptable
|
 |
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1426 |
Esophagus - muscularis
|
PAXgene |
2
|
6 pieces up to 8x3mm; more poorly preserved than usual
|
Acceptable
|
 |
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1826 |
Liver
|
PAXgene |
2
|
2 pieces 8x6 & 7x7mm; minimal steatosis
|
Acceptable
|
 |
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2226 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces up to 8.5x3mm; all muscularis
|
Acceptable
|
 |
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2526 |
Omentum
|
PAXgene |
2
|
2 pieces 8x8 & 9x7mm;
|
Acceptable
|
 |
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2726 |
Gastroesophageal junction
|
PAXgene |
2
|
6 pieces up to 8x4mm; muscle more poorly preserved than usual
|
Acceptable
|
 |
GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-0426 |
Artery - tibial
|
PAXgene |
2
|
2 pieces, 2.5x2.5 & 3x2mm; severe occlusive atherosclerosis; medial calcification
|
Acceptable
|
 |
GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-0526 |
Muscle, skeletal
|
PAXgene |
2
|
2 pieces, 9x8 & 10x9mm; patchy atrophy (ischemic probably)
|
Acceptable
|
 |
GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-0626 |
Atrial appendage
|
PAXgene |
2
|
2 pieces, 8x8 & 10x7mm;
|
Acceptable
|
 |
GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-0726 |
Heart
|
PAXgene |
2
|
2 pieces, 8x7 & 9x8mm; hypertrophied fibers
|
Acceptable
|
 |
GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-1026 |
Lung
|
PAXgene |
2
|
2 pieces, 10x8 & 9x7mm; focal subpleural fibrosis (BSS: please take specimens 1 cm beneath pleural surface)
|
Acceptable
|
 |
GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-1226 |
Thyroid gland
|
PAXgene |
2
|
2 pieces, 8x7 & 10.5X8mm; focal lymphoid infiltrates.
|
Acceptable
|
 |
GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-1326 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces, up to 6x2mm; epithelium partially sloughed.
LDACC note: esophagus epithelium is normally about 10% of the mucosal thickness; muscle and stroma make up the rest.
|
Acceptable
|
 |