GTEX-1CAMR
|
21-40
|
Male
|
GTEX-1CAMR-0826 |
Ileum
|
PAXgene |
1
|
6 pieces, ~10-15% well -preserved target lymphoid aggregates; delineated
|
Acceptable
|
|
GTEX-1CAMS
|
21-40
|
Female
|
GTEX-1CAMS-2426 |
Ileum
|
PAXgene |
1
|
6 pieces; irregularly distributed target lymphoid aggregates (outlined) in half of the pieces; well dissectedmucosa & sumucosa
|
Acceptable
|
|
GTEX-1CAV2
|
41-50
|
Female
|
GTEX-1CAV2-1926 |
Ileum
|
PAXgene |
2
|
6 pieces; limited lymphoid tissue in 2 pieces [labeled]; mostly muscularis (non-target); LCM
|
Unacceptable
|
|
GTEX-1CB4E
|
61-70
|
Male
|
GTEX-1CB4E-1426 |
Ileum
|
PAXgene |
1
|
6 pieces; 6 well defined lymphoid nodules [labeled], but excessive muscularis makes this only useful for LCM
|
Unacceptable
|
|
GTEX-1CB4F
|
61-70
|
Male
|
GTEX-1CB4F-1826 |
Ileum
|
PAXgene |
1
|
6 pieces; good lymphoid component
|
Acceptable
|
|
GTEX-1CB4G
|
51-60
|
Male
|
GTEX-1CB4G-2626 |
Ileum
|
PAXgene |
3
|
4 pieces, glands autolyzed; residual target lymphoid aggregates are ~20% of tissue; rep delineated
|
Acceptable
|
|
GTEX-1CB4H
|
61-70
|
Female
|
GTEX-1CB4H-2226 |
Ileum
|
PAXgene |
3
|
4 pieces; autolyzed mucosa & submucosa without significant lymphoid content
|
Unacceptable
|
|
GTEX-1CB4J
|
61-70
|
Male
|
GTEX-1CB4J-2826 |
Ileum
|
PAXgene |
2
|
6 pieces, glandular mucosa largely autolyzed; residual lymphoid aggregates are ~40% remainder, rep delineated.
|
Acceptable
|
|
GTEX-1E1VI
|
51-60
|
Male
|
GTEX-1E1VI-2626 |
Ileum
|
PAXgene |
2
|
5 pieces; autolyzed mucosa with no lymphoid tissue, muscularis (not target) also present
|
Unacceptable
|
|
GTEX-1E2YA
|
51-60
|
Male
|
GTEX-1E2YA-2326 |
Ileum
|
PAXgene |
3
|
4 pieces, autolyzed glandular elements; target lymphoid aggregates are ~30% of remainder, rep delineated
|
Acceptable
|
|
GTEX-1EH9U
|
61-70
|
Male
|
GTEX-1EH9U-2126 |
Ileum
|
PAXgene |
3
|
6 pieces; minimal lymphoid tissue; excessive muscularis
|
Unacceptable
|
|
GTEX-1EKGG
|
61-70
|
Male
|
GTEX-1EKGG-2426 |
Ileum
|
PAXgene |
3
|
6 pieces; significant component of targeted lymphoid tissue, but too autolyzed, also includes muscularis (not target)
|
Unacceptable
|
|
GTEX-1EMGI
|
61-70
|
Male
|
GTEX-1EMGI-2826 |
Ileum
|
PAXgene |
3
|
6 piecesm glandular mucosa sloughed/autolyzed; ~20% residual target lymphoid aggregates; rep. delineated
|
Acceptable
|
|
GTEX-1EN7A
|
41-50
|
Male
|
GTEX-1EN7A-2526 |
Ileum
|
PAXgene |
3
|
5 pieces; autolyzed mucosa and minimal lymphoid tissue
|
Unacceptable
|
|
GTEX-1EU9M
|
61-70
|
Male
|
GTEX-1EU9M-2526 |
Ileum
|
PAXgene |
3
|
6 pieces, glandular mucosa sloughed but target lymphoid aggregates are ~30% of residual tissue, rep delineated
|
Acceptable
|
|
GTEX-1EWIQ
|
61-70
|
Female
|
GTEX-1EWIQ-2726 |
Ileum
|
PAXgene |
3
|
4 pieces; predominantly autolyzed mucosa, residual lymphoid component too limited for analysis, muscularis (not target) also present
|
Unacceptable
|
|
GTEX-1EX96
|
51-60
|
Male
|
GTEX-1EX96-1826 |
Ileum
|
PAXgene |
3
|
6 pieces, no target lymphoid aggregates
|
Unacceptable
|
|
GTEX-1F52S
|
61-70
|
Female
|
GTEX-1F52S-2526 |
Ileum
|
PAXgene |
3
|
4 pieces; severely autolyzed mucosa with moderately autolyzed lymphoid tissue that comprises <30% of sample; LCM
|
Unacceptable
|
|
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-2026 |
Ileum
|
PAXgene |
1
|
6 pieces; all have muscularis and fat, no mucosa or lymphoid tissue
|
Unacceptable
|
|
GTEX-1F5PL
|
41-50
|
Female
|
GTEX-1F5PL-2026 |
Ileum
|
PAXgene |
1
|
6 pieces, colonic mucosa, unknown site, not GTEx target tissue
|
Unacceptable
|
|
GTEX-1F6I4
|
51-60
|
Male
|
GTEX-1F6I4-2426 |
Ileum
|
PAXgene |
2
|
6 pieces; autolyzed mucosa with some dispersed residual lymphoid component, muscularis also present (not target)
|
Unacceptable
|
|
GTEX-1F6IF
|
61-70
|
Male
|
GTEX-1F6IF-1026 |
Ileum
|
PAXgene |
3
|
6 pieces, glandular elments autolyzed; residucal viable lymphoid aggregates are ~30% tissue
|
Acceptable
|
|
GTEX-1F6RS
|
61-70
|
Female
|
GTEX-1F6RS-2426 |
Ileum
|
PAXgene |
3
|
4 pieces; insufficient lymphoid tissue; mucosa autolyzed
|
Unacceptable
|
|
GTEX-1F75A
|
51-60
|
Male
|
GTEX-1F75A-2326 |
Ileum
|
PAXgene |
3
|
4 pieces, glandular mucosa autolyzed; ~20% residual target lymhoid elements, rep delineated
|
Acceptable
|
|
GTEX-1F75B
|
51-60
|
Male
|
GTEX-1F75B-2626 |
Ileum
|
PAXgene |
2
|
4 pieces; autolyzed mucosa and residual target lymphoid aggregates of ~ 50% of tissue, includes residual muscularis (not target)
|
Acceptable
|
|