GTEX-14E7W
|
61-70
|
Male
|
GTEX-14E7W-2626 |
Ileum
|
PAXgene |
3
|
2 fragmented and autolyzed pieces with 1 outlined lymphoid nodule
|
Unacceptable
|
|
GTEX-14H4A
|
41-50
|
Female
|
GTEX-14H4A-2326 |
Uterus
|
PAXgene |
1
|
2 pieces; portion of ectocervix (target is corpus to include endometrium)
|
Unacceptable
|
|
GTEX-14ICK
|
41-50
|
Male
|
GTEX-14ICK-0426 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces: 1 with 80%fat, 10% co-llagen, 10% muscle; other has 80% muscle, 10% collagen, 10% fat
|
Unacceptable
|
|
GTEX-14ICK
|
41-50
|
Male
|
GTEX-14ICK-1226 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces; all have mucosa as well as muscularis; LCM
|
Unacceptable
|
|
GTEX-14ICK
|
41-50
|
Male
|
GTEX-14ICK-1326 |
Ileum
|
PAXgene |
3
|
6 pieces; full mural thickness; minimal lymphoid tissue. LCM
|
Unacceptable
|
|
GTEX-14ICK
|
41-50
|
Male
|
GTEX-14ICK-1426 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; >90% medulla
|
Unacceptable
|
|
GTEX-14ICK
|
41-50
|
Male
|
GTEX-14ICK-1526 |
Adrenal glands
|
PAXgene |
1
|
2 pieces; all adipose tissue, no adrenal
|
Unacceptable
|
|
GTEX-14ICK
|
41-50
|
Male
|
GTEX-14ICK-1926 |
Stomach
|
PAXgene |
1
|
6 pieces; muscularis only, no mucosa. LCM
|
Unacceptable
|
|
GTEX-14ICL
|
21-40
|
Male
|
GTEX-14ICL-0726 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, mixed muscularis, fat, gastric mucosa, not GTEx target
|
Unacceptable
|
|
GTEX-14ICL
|
21-40
|
Male
|
GTEX-14ICL-1326 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, too much adherent mucosa, not target muscularis
|
Unacceptable
|
|
GTEX-14JG1
|
41-50
|
Male
|
GTEX-14JG1-2626 |
Ileum
|
PAXgene |
3
|
6 pieces; well dissected mucosa, but no lymphoid tissue
|
Unacceptable
|
|
GTEX-14JG1
|
41-50
|
Male
|
GTEX-14JG1-2726 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; mucosa autolyzed, muscle intact; LCM
|
Unacceptable
|
|
GTEX-14JG6
|
21-40
|
Female
|
GTEX-14JG6-1826 |
Ileum
|
PAXgene |
1
|
6 pieces; 3 with mucosa/submucosa lack Peyer's patches, 3 with abundant lymphoid component include muscularis
|
Unacceptable
|
|
GTEX-14JIY
|
61-70
|
Male
|
GTEX-14JIY-1826 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, mucosa, not target muscularis
|
Unacceptable
|
|
GTEX-14JIY
|
61-70
|
Male
|
GTEX-14JIY-2126 |
Adrenal glands
|
PAXgene |
3
|
2 pieces, ~20% autolyzed cortex (rep delineated), mainly fat, not good GTEx target
|
Unacceptable
|
|
GTEX-14JIY
|
61-70
|
Male
|
GTEX-14JIY-2826 |
Ileum
|
PAXgene |
3
|
6 pieces, mucosa completely autolyzed; correct target, insufficient lymphoid tissue to warrant analysis
|
Unacceptable
|
|
GTEX-14JIY
|
61-70
|
Male
|
GTEX-14JIY-3126 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, testis, pronounced tubular hyalinization, 50% rete testis, viable islands of non hyperplastic Leydig cells, switched with 3325
|
Unacceptable
|
|
GTEX-14JIY
|
61-70
|
Male
|
GTEX-14JIY-3226 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, mucosa as well as muscularis, not GTEx target
|
Unacceptable
|
|
GTEX-14LLW
|
61-70
|
Female
|
GTEX-14LLW-1626 |
Coronary artery
|
PAXgene |
1
|
2 pieces; 60% external fat
|
Unacceptable
|
|
GTEX-14LLW
|
61-70
|
Female
|
GTEX-14LLW-2026 |
Ileum
|
PAXgene |
3
|
4 pieces; no lymphoid nodules (in autolyzed mucosa)
|
Unacceptable
|
|
GTEX-14LLW
|
61-70
|
Female
|
GTEX-14LLW-2126 |
Stomach
|
PAXgene |
3
|
6 pieces; mucosa totally autolyzed; muscularis intact; LCM
|
Unacceptable
|
|
GTEX-14LLW
|
61-70
|
Female
|
GTEX-14LLW-2226 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; mucosa totally autolyzed; muscularis intact; LCM
|
Unacceptable
|
|
GTEX-14LLW
|
61-70
|
Female
|
GTEX-14LLW-2326 |
Kidney - cortex
|
PAXgene |
3
|
6 pieces; tubules totally autolyzed
|
Unacceptable
|
|
GTEX-14LLW
|
61-70
|
Female
|
GTEX-14LLW-2426 |
Pancreas
|
PAXgene |
3
|
2 pieces; severe autolysis
|
Unacceptable
|
|
GTEX-14LLW
|
61-70
|
Female
|
GTEX-14LLW-2826 |
Brain - cerebellum
|
PAXgene |
2
|
4 fragmented pieces; CEREBRUM, not cerebellum; LDACC note: 2826 and 2926 may both be cerebellum
|
Unacceptable
|
|