GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-2726 |
Vagina
|
PAXgene |
2
|
6 pieces, up to 8x4mm; atrophic partially sloughed epithelium
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-3126 |
Brain - cortex
|
PAXgene |
2
|
4 pieces, up to 4.5x3mm;
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-3226 |
Pituitary gland
|
PAXgene |
2
|
1 piece, 13x5.5mm; anterior; loss of cell cohesion
|
Acceptable
|
|
GTEX-VUSG
|
51-60
|
Male
|
GTEX-VUSG-0426 |
Thyroid gland
|
PAXgene |
2
|
2 pieces ~13x7mm less well preserved than usual
|
Acceptable
|
|
GTEX-VUSG
|
51-60
|
Male
|
GTEX-VUSG-1526 |
Adrenal glands
|
PAXgene |
2
|
2 pieces ~12x9mm, all cortex, ~5% adherent fat, poorly preserved
|
Acceptable
|
|
GTEX-VUSG
|
51-60
|
Male
|
GTEX-VUSG-1726 |
Ileum
|
PAXgene |
2
|
6 pieces ~7x1mm. Lymphoid elements weel seen in half (encircled). Pigmented foreign material noted (?tattoo) ensquared, in one
|
Acceptable
|
|
GTEX-VUSG
|
51-60
|
Male
|
GTEX-VUSG-2126 |
Testis
|
PAXgene |
2
|
2 pieces ~13x9mm. Spermatogenesis present, poorly preserved
|
Acceptable
|
|
GTEX-W5WG
|
51-60
|
Female
|
GTEX-W5WG-1026 |
Vagina
|
PAXgene |
2
|
6 pieces ~8x4mm. Squamous mucosa, partly detached, <2% thickness. Minimal attached fat
|
Acceptable
|
|
GTEX-W5WG
|
51-60
|
Female
|
GTEX-W5WG-1426 |
Thyroid gland
|
PAXgene |
2
|
2 pieces ~8x7mm, focal areas of lymphocytic infiltrate c/w early Hashimoto's/lymphocytic thyroiditis. Less-well preserved than usual.
|
Acceptable
|
|
GTEX-W5X1
|
41-50
|
Female
|
GTEX-W5X1-0226 |
Pancreas
|
PAXgene |
2
|
2 pieces, 10x9 & 11x11mm. Moderate fibrosis of endocrine and exocrine tissue. (Diabetic history.)
|
Acceptable
|
|
GTEX-W5X1
|
41-50
|
Female
|
GTEX-W5X1-1626 |
Kidney - cortex
|
PAXgene |
2
|
7 pieces, up to 9x2mm; arteriolar and glomerular sclerosis consistent with diabetes; ~80% glomeruli are scarred; one piece and half of another piece are medulla
|
Acceptable
|
|
GTEX-W5X1
|
41-50
|
Female
|
GTEX-W5X1-1726 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, up to 9.5x2mm; autolysis ranges from moderate to severe
|
Acceptable
|
|
GTEX-W5X1
|
41-50
|
Female
|
GTEX-W5X1-1926 |
Ileum
|
PAXgene |
2
|
6 pieces, up to 10.5x1.5mm; sparse lymphoid nodules, moderately autolyzed; totally autolyzed glands; mucosa and submucosa as targeted, no muscularis
|
Acceptable
|
|
GTEX-W5X1
|
41-50
|
Female
|
GTEX-W5X1-2126 |
Uterus
|
PAXgene |
2
|
2 pieces, 9x8 & 12x8mm; endometrium in one piece, not in other
|
Acceptable
|
|
GTEX-WEY5
|
41-50
|
Female
|
GTEX-WEY5-1426 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, up to 10x3mm; mucosa moderately autolyzed; muscle slightly autolyzed
|
Acceptable
|
|
GTEX-WFG8
|
21-40
|
Male
|
GTEX-WFG8-1526 |
Colon, transverse
|
PAXgene |
2
|
6 pieces ~9x2mm. Mucosa partly sloughed, not well preserved
|
Acceptable
|
|
GTEX-WFON
|
41-50
|
Male
|
GTEX-WFON-1326 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, ~9x2mm. Muscularis and fat, presumed sigmoid aliquots 1525 below
|
Acceptable
|
|
GTEX-WFON
|
41-50
|
Male
|
GTEX-WFON-1426 |
Colon, transverse
|
PAXgene |
2
|
6 pieces ~10x3mm. Mucosa variably but moderately preserved, ~10-15% of thickness
|
Acceptable
|
|
GTEX-WFON
|
41-50
|
Male
|
GTEX-WFON-1526 |
Ileum
|
PAXgene |
2
|
6 pieces ~9x2.5mm. Small bowel mucosa (delineated) with scattered lymphoid aggregates, encircled. Should be relabled as ileum, presumed switch with 1325 above
|
Acceptable
|
|
GTEX-WH7G
|
41-50
|
Male
|
GTEX-WH7G-1626 |
Ileum
|
PAXgene |
2
|
6 pieces, up to 9x4mm; 4 of 6 have targeted 6 pieces, up to mucosa/submucosa with lymphoid tissue, but 5 of 6 have (unwanted) muscularis propria.
|
Acceptable
|
|
GTEX-WH7G
|
41-50
|
Male
|
GTEX-WH7G-1726 |
Prostate
|
PAXgene |
2
|
2 pieces, 9x7 & 8x8mm; Stromal hyperplasia; 1 has periurethral ducts and glands
|
Acceptable
|
|
GTEX-WH7G
|
41-50
|
Male
|
GTEX-WH7G-1926 |
Testis
|
PAXgene |
2
|
2 pieces, 8x6 & 8x7mm; Moderate tubular and interstitial fibrosis; decreased spermatogenesis.
|
Acceptable
|
|
GTEX-WHSE
|
Other
|
Male
|
GTEX-WHSE-0626 |
Thyroid gland
|
PAXgene |
2
|
2 pieces ~6x6mm
|
Acceptable
|
|
GTEX-WHSE
|
Other
|
Male
|
GTEX-WHSE-1826 |
Liver
|
PAXgene |
2
|
2 pieces ~7x5mm. No steatosis, moderately autolyzed
|
Acceptable
|
|
GTEX-WHSE
|
Other
|
Male
|
GTEX-WHSE-2026 |
Pancreas
|
PAXgene |
2
|
2 pieces ~7x7mm. Minimal fat, moderate saponification. Islets poorly visualized
|
Acceptable
|
|