GTEX-T5JW
|
21-40
|
Female
|
GTEX-T5JW-0626 |
Urinary bladder
|
PAXgene |
2
|
6 pieces, ~ 6x4mm, urothelium partly sloughed, <2% of thickness when present
|
Acceptable
|
|
GTEX-T5JW
|
21-40
|
Female
|
GTEX-T5JW-1026 |
Urinary bladder
|
PAXgene |
2
|
6 pieces mucosa, ~ 6x3mm sloughed mucosa: not vagina but additional bladder. May be used as such when relabled
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-1326 |
Spleen
|
PAXgene |
2
|
2 pieces 8x7 & 9x8 mm; markedly congested with blood
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-1426 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces up to 8x2 mm; mucosa partly sloughed, hyperplastic and chronically inflamed, consistent with gastric reflux
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-1626 |
Pancreas
|
PAXgene |
2
|
2 pieces 8x6 & 7x7 mm; ~10% adipose within parenchyma (not outside)
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-1726 |
Adrenal glands
|
PAXgene |
2
|
2 pieces 17x2 & 16x2 mm with about same amount of peripheral adipose along one edge
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-1826 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces up to 8x4 mm; all cortex; moderate vascular congestion
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-1926 |
Kidney - medulla
|
PAXgene |
2
|
2 pieces 10x7 & 8x8 mm; both have cortex (30-40%) and medulla; moderate vascular congestion
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-2026 |
Testis
|
PAXgene |
2
|
2 pieces 10x5 & 10x8 mm; spermatogenesis
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-2426 |
Stomach
|
PAXgene |
2
|
6 pieces up to 8x3 mm; only deep mucosa has intact glands
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-2526 |
Brain - cerebellum
|
PAXgene |
2
|
4 pieces up to 5x5 mm;
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-2626 |
Brain - cortex
|
PAXgene |
2
|
4 pieces up to 5x5 mm;
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-2726 |
Pituitary gland
|
PAXgene |
2
|
2 pieces: 6x4 mm with good parenchyma; 6x1.7 is largely fibrous tissue
|
Acceptable
|
|
GTEX-T6MO
|
21-40
|
Female
|
GTEX-T6MO-0426 |
Lung
|
PAXgene |
2
|
2 pieces, ~8x8mm. Diffuse intra-alveolar hemorrhage but minimal inflammation
|
Acceptable
|
|
GTEX-T6MO
|
21-40
|
Female
|
GTEX-T6MO-0926 |
Urinary bladder
|
PAXgene |
2
|
6 pieces ~10x5mm, urothelium largely sloughed, where present less than 1% of thickness
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0726 |
Urinary bladder
|
PAXgene |
2
|
5 pieces fragmented, ~8x4mm. Urothelium partly sloughed but better preserved than typical, <1% of thickness
|
Acceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-0526 |
Urinary bladder
|
PAXgene |
2
|
4 pieces ~5x3mm, 2 with partallly sloughed urothelium, where present <1% of thickness
|
Acceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-1526 |
Testis
|
PAXgene |
2
|
2 pieces, ~8x5mm. Spermatogenesis is present but poorly preserved
|
Acceptable
|
|
GTEX-TMMY
|
41-50
|
Female
|
GTEX-TMMY-1526 |
Urinary bladder
|
PAXgene |
2
|
6 pieces ~7x5mm. Urothelium partly sloughed but better preserved than usual
|
Acceptable
|
|
GTEX-TMMY
|
41-50
|
Female
|
GTEX-TMMY-1626 |
Stomach
|
PAXgene |
2
|
6 pieces ~7x3mm. Mucosa partly autolyzed on luminal side, ~20% of thickness
|
Acceptable
|
|
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-1126 |
Liver
|
PAXgene |
2
|
2 pieces 8x7 & 7x7 mm; moderate sinusoidal congestion; fibrovascular area 4.7x1.8 mm at center of one piece
|
Acceptable
|
|
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-1926 |
Adrenal glands
|
PAXgene |
2
|
2 pieces 14x2 & 11x6 mm; ~20% adherent adipose
|
Acceptable
|
|
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-2026 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces up to 7x3 mm; virtually all glomeruli are sclerosed, many showing characteristic diabetic glomerulosclerosis; also arterial and arteriolar sclerosis
|
Acceptable
|
|
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-2126 |
Kidney - medulla
|
PAXgene |
2
|
2 pieces 8x7 & 7x6 mm; all medulla, no cortex
|
Acceptable
|
|
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-2326 |
Fallopian tube
|
PAXgene |
2
|
2 pieces 4 mm in diameter; epithelium sloughed
|
Acceptable
|
|