GTEX-WFJO
|
21-40
|
Male
|
GTEX-WFJO-1126 |
Stomach
|
PAXgene |
1
|
6 pieces, up to 10x5mm; all muscularis, no mucosa
|
Acceptable
|
|
GTEX-WFJO
|
21-40
|
Male
|
GTEX-WFJO-1226 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, up to 7x3mm; all have mucosa, 3 have muscle; Muscle is slightly autolyzed, mucosa is moderately autolyzed.
|
Acceptable
|
|
GTEX-WFJO
|
21-40
|
Male
|
GTEX-WFJO-1326 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces, up to 11x5mm; well trimmed of subcutaneous adipose.
|
Acceptable
|
|
GTEX-WFJO
|
21-40
|
Male
|
GTEX-WFJO-1426 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 9.5x9 & 10x9mm; several ducts in fibrous tissue; 80-90% adipose with central unfixed holes
|
Acceptable
|
|
GTEX-WFJO
|
21-40
|
Male
|
GTEX-WFJO-1526 |
Testis
|
PAXgene |
1
|
2 pieces, 11x5 & 10x6mm; spermatogenesis present
|
Acceptable
|
|
GTEX-WFJO
|
21-40
|
Male
|
GTEX-WFJO-1626 |
Colon, transverse
|
PAXgene |
1
|
7 pieces, up to 10x4.5mm; all have full thickness of wall
|
Acceptable
|
|
GTEX-WFJO
|
21-40
|
Male
|
GTEX-WFJO-1726 |
Prostate
|
PAXgene |
1
|
2 pieces, 8x5 & 10x9.5mm; no prostate, only fibroadipose tissue
|
Unacceptable
|
|
GTEX-WFJO
|
21-40
|
Male
|
GTEX-WFJO-1826 |
Skin, leg
|
PAXgene |
0
|
6 pieces, up to 9.5x3mm; well trimmed subcutaneous adipose tissue
|
Acceptable
|
|
GTEX-WFJO
|
21-40
|
Male
|
GTEX-WFJO-1926 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 13x9 & 15x10mm; central hollow unfixed areas up to 6x4mm
|
Acceptable
|
|
GTEX-WFJO
|
21-40
|
Male
|
GTEX-WFJO-2026 |
Minor salivary glands
|
PAXgene |
1
|
6 pieces, up to 2x2mm; very good well trimmed samples especially largest
|
Acceptable
|
|
GTEX-WFJO
|
21-40
|
Male
|
GTEX-WFJO-2126 |
Artery - tibial
|
PAXgene |
1
|
2 pieces, 2.5x2 & 4x2mm; small plaques
|
Acceptable
|
|
GTEX-WFJO
|
21-40
|
Male
|
GTEX-WFJO-2226 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 6x5.5mm & 6x3.5mm; ~40% internal and external adipose tissue among nerve bundles
|
Acceptable
|
|
GTEX-WFJO
|
21-40
|
Male
|
GTEX-WFJO-2326 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, 8x8 & 12x9mm; ~10% internal and external adipose and fibrous tissue
|
Acceptable
|
|
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0126 |
Lung
|
PAXgene |
1
|
2 pieces ~7x6, one with marked congestion/chronic pneumonitis
|
Acceptable
|
|
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0226 |
Aorta
|
PAXgene |
1
|
6 pieces ~9x1mm, 4 of 6 have adherent fat/vasa vasorum up to 2mm thick, delineated
|
Acceptable
|
|
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0326 |
Prostate
|
PAXgene |
1
|
2 pieces ~11x4mm, one with adherent fat/fibrous nubbin up to 5mm
|
Acceptable
|
|
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0426 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces ~4x3mm 10-15% squamous mucosa, numerous submucosal glands present, representative ones encircled
|
Acceptable
|
|
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0526 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces ~6x5mm, all muscularis, should be labeled as such
|
Acceptable
|
|
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0626 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces ~5x2mm, squamous mucosa is ~20% of thickness. should be labeled mucosa
|
Acceptable
|
|
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0726 |
Omentum
|
PAXgene |
1
|
1 piece ~12x8mm
|
Acceptable
|
|
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0826 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces ~10x5mm. Squamous epithelium is 2-3% of thickness
|
Acceptable
|
|
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0926 |
Stomach
|
PAXgene |
1
|
6 pieces ~9x5mm. Mucosa remarkably well-preserved ~25% of thickness
|
Acceptable
|
|
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-1026 |
Mammary tissue (breast)
|
PAXgene |
1
|
1 piece ~11x11mm. Single minute focus of ductal elements, encircled
|
Acceptable
|
|
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-1126 |
Testis
|
PAXgene |
1
|
1 piece ~13x10mm. Spermatogenesis is present/within normal limits
|
Acceptable
|
|
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-1226 |
Skin, leg
|
PAXgene |
0
|
6 pieces ~11x4mm. Squmous epithelium is ~2-3% of thickness
|
Acceptable
|
|