GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1426 |
Vagina
|
PAXgene |
0
|
6 pieces, up to 9x5mm; all have epithelium
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1526 |
Uterus
|
PAXgene |
1
|
2 pieces, 10x8 & 8.5x8mm; one has thin endometrium, other has no endometrium on this cut
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1626 |
Skin, leg
|
PAXgene |
0
|
6 pieces, up to 8x3mm; most subcutaneous adipose removed; keratin layer looks thicker than usual
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1726 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 6x3mm; all have full thickness with good mucosa
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1826 |
Stomach
|
PAXgene |
1
|
6 pieces, up to 9.5x4mm; 3 are full thickness, other 3 are muscularis only with adjacent submucosal adipose
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1926 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 9x5 & 7x7mm; ducts and immature lobules
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-2026 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 1.5x2.5mm & 2x1 mm; consists of nerves not artery, the smaller piece encased in ~60% adipose
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-2126 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 2x1.5mm & 2x4mm; ~20% adjacent adipose
|
Acceptable
|
|
GTEX-VUSH
|
21-40
|
Male
|
GTEX-VUSH-0126 |
Skin, leg
|
PAXgene |
1
|
6 pieces, up to 9x4.5mm; up to 2 mm thick subcutaneous adipose in 5 pieces
|
Acceptable
|
|
GTEX-VUSH
|
21-40
|
Male
|
GTEX-VUSH-0226 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 11x10 & 12x9mm; ~30% central defect in one; 10% in other
|
Acceptable
|
|
GTEX-VUSH
|
21-40
|
Male
|
GTEX-VUSH-0326 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, 12.5x11 & 11x9mm; prominent focal hemorrhages and interstital edema; <5% adipose
|
Acceptable
|
|
GTEX-VUSH
|
21-40
|
Male
|
GTEX-VUSH-0426 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 5x3 & 5x3.5mm; <10% adipose
|
Acceptable
|
|
GTEX-VUSH
|
21-40
|
Male
|
GTEX-VUSH-0526 |
Artery - tibial
|
PAXgene |
1
|
2 pieces, 3x2 & 3.5x2mm;1, 2mm artery and 0.6 mm vein in each; <10% adipose
|
Acceptable
|
|
GTEX-WFG7
|
21-40
|
Male
|
GTEX-WFG7-0126 |
Spleen
|
PAXgene |
1
|
2 pieces ~10x7mm
|
Acceptable
|
|
GTEX-WFG7
|
21-40
|
Male
|
GTEX-WFG7-0226 |
Adrenal glands
|
PAXgene |
1
|
2 pieces ~7x6mm. Central foci of medulla in both 2-2.5mm in d. All extremely well preserved
|
Acceptable
|
|
GTEX-WFG7
|
21-40
|
Male
|
GTEX-WFG7-0326 |
Thyroid gland
|
PAXgene |
1
|
2 pieces ~11x8 mm
|
Acceptable
|
|
GTEX-WFG7
|
21-40
|
Male
|
GTEX-WFG7-0426 |
Pancreas
|
PAXgene |
1
|
2 pieces ~11x8mm. Extremely well-preserved, no adherent fat. Well visualized Islets, encircled
|
Acceptable
|
|
GTEX-WFG7
|
21-40
|
Male
|
GTEX-WFG7-0526 |
Lung
|
PAXgene |
0
|
2 pieces ~7x6mm Unusally well preserved, well visualized and preserved bronchial structures noted, encircled
|
Acceptable
|
|
GTEX-WFG7
|
21-40
|
Male
|
GTEX-WFG7-0626 |
Coronary artery
|
PAXgene |
0
|
2 pieces ~2mm d. Discontinuous rims of fat on both, up to 0.5mm. Minimal atherosis
|
Acceptable
|
|
GTEX-WFG7
|
21-40
|
Male
|
GTEX-WFG7-0726 |
Heart
|
PAXgene |
0
|
2 pieces ~8x7mm, Minimal ischemic changes
|
Acceptable
|
|
GTEX-WFG7
|
21-40
|
Male
|
GTEX-WFG7-0826 |
Atrial appendage
|
PAXgene |
0
|
2 pieces ~11x77
|
Acceptable
|
|
GTEX-WFG7
|
21-40
|
Male
|
GTEX-WFG7-0926 |
Aorta
|
PAXgene |
1
|
6 pieces ~10x1.5mm
|
Acceptable
|
|
GTEX-WFG7
|
21-40
|
Male
|
GTEX-WFG7-1026 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces ~7x4mm
|
Acceptable
|
|
GTEX-WFG7
|
21-40
|
Male
|
GTEX-WFG7-1126 |
Esophagus - mucosa
|
PAXgene |
0
|
6 pieces ~6x1.5mm. Squamous mucosa is ~10% thickness
|
Acceptable
|
|
GTEX-WFG7
|
21-40
|
Male
|
GTEX-WFG7-1226 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces ~8x4mm. All muscle, no mucosa, excellent specimens
|
Acceptable
|
|