GTEX-RTLS
|
61-70
|
Female
|
GTEX-RTLS-1826 |
Kidney - medulla
|
PAXgene |
2
|
2 pieces, 8x8 & 9x8 mm; both contain medulla and cortex (image annotated)
|
Acceptable
|
 |
GTEX-RTLS
|
61-70
|
Female
|
GTEX-RTLS-1926 |
Cervix - ectocervix
|
PAXgene |
2
|
4 pieces up to 8x5 mm; partially sloughed squamous lining on one piece, others do not have epithelium
|
Acceptable
|
 |
GTEX-RTLS
|
61-70
|
Female
|
GTEX-RTLS-2126 |
Vagina
|
PAXgene |
2
|
6 pieces up to 7x3 mm; atrophic, largely sloughed epithelium
|
Acceptable
|
 |
GTEX-RTLS
|
61-70
|
Female
|
GTEX-RTLS-2626 |
Stomach
|
PAXgene |
2
|
6 pieces up to 7x2 mm; mucosa moderately autolyzed
|
Acceptable
|
 |
GTEX-RU72
|
51-60
|
Female
|
GTEX-RU72-0526 |
Lung
|
PAXgene |
2
|
2 aliquots, ~8x5mm. Severe diffuse alveolar congestion/edema
|
Acceptable
|
 |
GTEX-RU72
|
51-60
|
Female
|
GTEX-RU72-1526 |
Spleen
|
PAXgene |
2
|
2 aliquots, ~9x7mm
|
Acceptable
|
 |
GTEX-RU72
|
51-60
|
Female
|
GTEX-RU72-1626 |
Pancreas
|
PAXgene |
2
|
2 aliquots, ~10x7mm, minimal interstitial fat, peripheral saponifcation, moderate
|
Acceptable
|
 |
GTEX-RU72
|
51-60
|
Female
|
GTEX-RU72-1726 |
Adrenal glands
|
PAXgene |
2
|
2 aliquots, ~15x4mm. LDACC note: Discontinuous fat rim, 0.5-1.5mm around both
|
Acceptable
|
 |
GTEX-RU72
|
51-60
|
Female
|
GTEX-RU72-1826 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces, ~7x2.5mm. Minor components of 'contaminating' medulla, noted on images
|
Acceptable
|
 |
GTEX-RU72
|
51-60
|
Female
|
GTEX-RU72-1926 |
Kidney - medulla
|
PAXgene |
2
|
2 aliquots, ~8x6mm. Minor (~20-30%) 'contamination' by cortex with glomeruli, noted on images
|
Acceptable
|
 |
GTEX-RU72
|
51-60
|
Female
|
GTEX-RU72-2026 |
Stomach
|
PAXgene |
2
|
6 pieces, ~8x1.5mm. Mucosa moderately autolyzed; superficial layer completely necrotic, ? relationship to drug overdose
|
Acceptable
|
 |
GTEX-RU72
|
51-60
|
Female
|
GTEX-RU72-2126 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, ~6.5x2.5. Mucosa moderately autolyzed, ~ 10--15% of thickness
|
Acceptable
|
 |
GTEX-RU72
|
51-60
|
Female
|
GTEX-RU72-2626 |
Uterus
|
PAXgene |
2
|
2 aliquots, ~6x6mm. Endometrial glands/stroma are ~10% of thickness, glands poorly preserved
|
Acceptable
|
 |
GTEX-RU72
|
51-60
|
Female
|
GTEX-RU72-2926 |
Brain - cerebellum
|
PAXgene |
2
|
4pieces, ~5x4mm. Granular layer more autolyzed
|
Acceptable
|
 |
GTEX-RU72
|
51-60
|
Female
|
GTEX-RU72-3126 |
Pituitary gland
|
PAXgene |
2
|
1 8.5x6mm aliquot
|
Acceptable
|
 |
GTEX-RUSQ
|
51-60
|
Male
|
GTEX-RUSQ-1426 |
Prostate
|
PAXgene |
2
|
2 aliquots, ~10x6mm. Glands with moderate-marked mucosal autolysis. Glandular and stromal hyperplasia
|
Acceptable
|
 |
GTEX-RVPU
|
51-60
|
Male
|
GTEX-RVPU-0126 |
Testis
|
PAXgene |
2
|
2 aliquots, ~6x5mm
|
Acceptable
|
 |
GTEX-RVPU
|
51-60
|
Male
|
GTEX-RVPU-0226 |
Thyroid gland
|
PAXgene |
2
|
2 aliquots, ~7x7mm. Patchy thyroiditis/regressive changes. Badly autolyzed
|
Acceptable
|
 |
GTEX-RVPU
|
51-60
|
Male
|
GTEX-RVPU-0526 |
Lung
|
PAXgene |
2
|
2 aliquots, ~8x7mm. Diffuse patchy congestion. Moderately autolyzed
|
Acceptable
|
 |
GTEX-RVPU
|
51-60
|
Male
|
GTEX-RVPU-0826 |
Liver
|
PAXgene |
2
|
2 aliquots, ~7x7mm.
|
Acceptable
|
 |
GTEX-RVPU
|
51-60
|
Male
|
GTEX-RVPU-0926 |
Spleen
|
PAXgene |
2
|
2 aliquots, ~6.5x5mm. Poorly processed & badly autolyzed
|
Acceptable
|
 |
GTEX-RVPU
|
51-60
|
Male
|
GTEX-RVPU-1026 |
Adrenal glands
|
PAXgene |
2
|
2 aliquots, ~15x3.5mm. ~50% of each is adherent fat
|
Acceptable
|
 |
GTEX-RVPU
|
51-60
|
Male
|
GTEX-RVPU-1126 |
Pancreas
|
PAXgene |
2
|
2 aliquots, ~8x7mm. Badly autolyzed, ~30% of one aliquot is fat with saponification
|
Acceptable
|
 |
GTEX-RVPU
|
51-60
|
Male
|
GTEX-RVPU-1226 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces ~5x3.5mm.
|
Acceptable
|
 |
GTEX-RVPU
|
51-60
|
Male
|
GTEX-RVPU-1326 |
Kidney - medulla
|
PAXgene |
2
|
2 aliquots, one all fat/fibrovascular tissue, one vessel + small focus completely autozlyzed renal tubules
|
Unacceptable
|
 |