GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-1426 |
Lung
|
PAXgene |
1
|
2 pieces ~7x6mm. Well preserved, mild emphysematous changes. Good bronchial preservation, representative bronchioles encircled
|
Acceptable
|
|
GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-1526 |
Liver
|
PAXgene |
1
|
2 pieces ~7x6mm. Diffuse macrovesicular steatosis involves 50-60% of parenchyma, with focal early bridging fibrosis
|
Acceptable
|
|
GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-1626 |
Spleen
|
PAXgene |
1
|
2 pieces ~7x7mm, moderate congestion
|
Acceptable
|
|
GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-1726 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces ~6x1.5mm, Squamous mucosa is ~10% thickness
|
Acceptable
|
|
GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-1826 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces ~7x3.5mm
|
Acceptable
|
|
GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-1926 |
Omentum
|
PAXgene |
1
|
2 pieces ~8x5mm, well preserved adipose tissue
|
Acceptable
|
|
GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-2026 |
Pancreas
|
PAXgene |
1
|
2 pieces 7x6mm. Remarkably well preserved, ~20% interstitial/adherent fat; Islets well preserved, representative ones encircled
|
Acceptable
|
|
GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-2126 |
Stomach
|
PAXgene |
2
|
6 pieces, ~8x3mm Mucosa moderate autolyzed, ~25% thickness
|
Acceptable
|
|
GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-2226 |
Ileum
|
PAXgene |
3
|
6 pieces ~8x3mm. Includes all layers, autolyzed mucosa, rare germinal centers, encircled
|
Acceptable
|
|
GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-2326 |
Colon, sigmoid
|
PAXgene |
3
|
6 pieces `8x3mm. Mucosa badly autolyzed ~5-10% thickness
|
Acceptable
|
|
GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-2426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces ~7x1.5mm. Mucosa badly autolyzed, ~10% thickness
|
Acceptable
|
|
GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-2526 |
Prostate
|
PAXgene |
1
|
2 pieces ~8x7mm. Glandular mucosa extremely well preserved
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-0126 |
Spleen
|
PAXgene |
1
|
2 pieces, 7x7 & 9x8mm
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-0226 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, 8x8 & 9x8mm
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-0326 |
Coronary artery
|
PAXgene |
0
|
2 pieces, 7x4 & 3.5x3mm; 40 and 60% adjacent adipose
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-0426 |
Heart
|
PAXgene |
0
|
2 pieces, 8x5 & 8x6mm
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-0526 |
Aorta
|
PAXgene |
0
|
6 pieces, up to 10mmx807um; focal periadventitial adipose
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-0626 |
Esophagus - muscularis
|
PAXgene |
0
|
6 pieces, up to 8x4mm; good muscle and neural tissue
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-0726 |
Pancreas
|
PAXgene |
1
|
2 pieces, 9x8 & 9x7mm; very well preserved; lots of islets; 40-50% adjacent adipose
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-0826 |
Lung
|
PAXgene |
1
|
2 pieces, 10x6.5 & 7x6mm; patchy interstitial fibrosis and pneumonitis
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-0926 |
Liver
|
PAXgene |
1
|
2 pieces, 8x8 & 8x7mm; no steatosis, no fibrosis
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 5.5x2.5mm; mild chronic inflammation (correlates with history of gastric reflux)
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1126 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces, up to 9x3mm; good preservation; no renal lesions
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1226 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, 13x10 & 10x8mm; central portion is hollow, presumably not fixed; outer rim of tissue is from 0.1 to 3 mm thick; the two pieces contain about 40% muscle and 60% adipose interspersed; because of the Trisomy 17 diagnosis I recommend keeping this although for GTEx purposes it is not acceptable
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1326 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 11x9.5 & 10x7mm; larger piece has central hollow defect >50% of aliquot
|
Acceptable
|
|