GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1326 |
Stomach
|
PAXgene |
1
|
6 pieces; 4 have full thickness wall, 2 are without muscularis
|
Acceptable
|
 |
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1426 |
Pancreas
|
PAXgene |
1
|
2 pieces; multiple foci of fibrosis (probable healed pancreatitis); 30% external fat on 1, 20% on other
|
Acceptable
|
 |
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1526 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces; 3 have deep pockets of fat up to 1.3mm across
|
Acceptable
|
 |
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1626 |
Ileum
|
PAXgene |
1
|
6 pieces; 5 have abundant mucosal lymphoid tissue, but 5 have muscularis (not target). LCM
|
Unacceptable
|
 |
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1726 |
Colon, transverse
|
PAXgene |
1
|
6 pieces; 2 lack muscularis LCM
|
Acceptable
|
 |
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1826 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; 3 have mucosa (not target) as well as muscularis. LCM
|
Unacceptable
|
 |
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1926 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; fibrofatty tissue without mammary ducts
|
Acceptable
|
 |
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-2026 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces; salivary glands in both but comprise only 30% & 5% of samples, remainder is skin and muscle. LCM
|
Unacceptable
|
 |
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-2126 |
Prostate
|
PAXgene |
1
|
2 pieces; 1 piece has abundant well preserved prostatic tissue, other is 95% neuromuscular & fatty tissue
|
Unacceptable
|
 |
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-2226 |
Skin, leg
|
PAXgene |
1
|
6 pieces; well dissected; 5% dermal fat
|
Acceptable
|
 |
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-2426 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces; 1 has 10% internal fat
|
Acceptable
|
 |
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-2626 |
Adipose tissue
|
PAXgene |
1
|
2 pieces; 1mm smooth muscle carry-over [annotated]
|
Acceptable
|
 |
GTEX-145MO
|
61-70
|
Male
|
GTEX-145MO-0126 |
Testis
|
PAXgene |
1
|
2 pieces, spermatogenesis present
|
Acceptable
|
 |
GTEX-145MO
|
61-70
|
Male
|
GTEX-145MO-0226 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, no abnormalities
|
Acceptable
|
 |
GTEX-145MO
|
61-70
|
Male
|
GTEX-145MO-0926 |
Coronary artery
|
PAXgene |
1
|
2 pieces, ~50% fat, small vessels only, not suitable for GTEx
|
Unacceptable
|
 |
GTEX-145MO
|
61-70
|
Male
|
GTEX-145MO-1026 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, not normal atrial tissue, resembles large vessel, not GTEx target
|
Unacceptable
|
 |
GTEX-145MO
|
61-70
|
Male
|
GTEX-145MO-1126 |
Heart
|
PAXgene |
1
|
2 pieces, moderate chronic ischemic changes/interstitial fibrosis
|
Acceptable
|
 |
GTEX-145MO
|
61-70
|
Male
|
GTEX-145MO-1226 |
Aorta
|
PAXgene |
1
|
6 pieces, up to ~0.2mm atherosis
|
Acceptable
|
 |
GTEX-145MO
|
61-70
|
Male
|
GTEX-145MO-1326 |
Lung
|
PAXgene |
1
|
2 pieces, patchy acute pneumonia/peribronchitis
|
Acceptable
|
 |
GTEX-145MO
|
61-70
|
Male
|
GTEX-145MO-1426 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, squamous mucosa is ~0.3mm, superficial sloughing. Submucosal mucus glands incidentally present, rep encircled.
|
Acceptable
|
 |
GTEX-145MO
|
61-70
|
Male
|
GTEX-145MO-1526 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, all target muscularis.
|
Acceptable
|
 |
GTEX-145MO
|
61-70
|
Male
|
GTEX-145MO-1626 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, all target muscularis
|
Acceptable
|
 |
GTEX-145MO
|
61-70
|
Male
|
GTEX-145MO-1726 |
Omentum
|
PAXgene |
1
|
2 pieces, ~10-15% fascia/vascular tissue, rep delineated
|
Acceptable
|
 |
GTEX-145MO
|
61-70
|
Male
|
GTEX-145MO-1826 |
Adrenal glands
|
PAXgene |
1
|
2 pieces, all cortex
|
Acceptable
|
 |
GTEX-145MO
|
61-70
|
Male
|
GTEX-145MO-2126 |
Pancreas
|
PAXgene |
1
|
2 pieces, some areas approach autolysis score two. Area of fibrotic remote pancreatitis ensquared. Reasonably well-preserved Islets, rep. delineated
|
Acceptable
|
 |