GTEX-T6MO
|
21-40
|
Female
|
GTEX-T6MO-1926 |
Artery - tibial
|
PAXgene |
0
|
2 pieces ~4.5mm d generally clean specimen, trace adherent fat/fibrous tissue
|
Acceptable
|
|
GTEX-T6MO
|
21-40
|
Female
|
GTEX-T6MO-2026 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces ~6mm d. some interstital fat and focal adherent fat, up to 1mm thick
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0126 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, ~12x6mm. Focal lymphocytic thyroiditis (encircled), not diffuse enough to be Hashimoto's
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0226 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 pieces ~12x6mm. No visible ductal elements, fibro-adipose tissues only.
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0326 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces ~8x2.5mm. Squamous mucosa is ~10-20% of thickness; occasional sub-mucosal glands noted, encircled. Focal chronic inflammation ensquared.
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0426 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces ~8x3mm
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0526 |
Stomach
|
PAXgene |
1
|
6 pieces, ~10x4mm. Mucosa well- preserved, ~20-25% of thickness. Surface hemorrhage/erosions ? etiology.
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0626 |
Colon, transverse
|
PAXgene |
1
|
6 pieces ~9x3mm. Mucosa remarkably well-preserved, ~10% of thickness
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0726 |
Urinary bladder
|
PAXgene |
2
|
5 pieces fragmented, ~8x4mm. Urothelium partly sloughed but better preserved than typical, <1% of thickness
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0826 |
Prostate
|
PAXgene |
1
|
2 pieces, not prostate but seminal vesicle
|
Unacceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0926 |
Testis
|
PAXgene |
1
|
2 pieces ~8x8mm. Better preserved than usual, spermatogenesis present but appears slightly reduced
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-1026 |
Skin, leg
|
PAXgene |
0
|
6 pieces, ~6x2.5mm. Squamous epithelium is ~2-3% of thickness.
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-1126 |
Adipose tissue
|
PAXgene |
0
|
2 pieces ~10x5mm
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-1226 |
Artery - tibial
|
PAXgene |
0
|
2 pieces ~5mm d. Excellent clean specimens; one aliquot with small branch arteries, encircled, suitable for analysis.
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-1326 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, ~4.5-5mm d. Excellent clean specimens, minimal fat.
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-1426 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces ~10x7mm, <5% interstital fat
|
Acceptable
|
|
GTEX-U3ZH
|
21-40
|
Male
|
GTEX-U3ZH-0126 |
Spleen
|
PAXgene |
1
|
2 pieces ~10x8mm
|
Acceptable
|
|
GTEX-U3ZH
|
21-40
|
Male
|
GTEX-U3ZH-0226 |
Thyroid gland
|
PAXgene |
1
|
2 pieces ~10x9mm. Patch Hashimoto's thyroiditis, regressive areas noted
|
Acceptable
|
|
GTEX-U3ZH
|
21-40
|
Male
|
GTEX-U3ZH-0326 |
Heart
|
PAXgene |
1
|
2 pieces ~10x8mm. Minimal ischemic damage
|
Acceptable
|
|
GTEX-U3ZH
|
21-40
|
Male
|
GTEX-U3ZH-0426 |
Coronary artery
|
PAXgene |
1
|
2 pieces ~3mm. Minimal atherosclerosis
|
Acceptable
|
|
GTEX-U3ZH
|
21-40
|
Male
|
GTEX-U3ZH-0526 |
Lung
|
PAXgene |
2
|
2 pieces ~8x8mm. Atalectatic, focal lymphoid follicle/intrapulmonary lymph node noted, encircled
|
Acceptable
|
|
GTEX-U3ZH
|
21-40
|
Male
|
GTEX-U3ZH-0626 |
Aorta
|
PAXgene |
1
|
6 pieces ~9x1.5mm. Minimal atherosis
|
Acceptable
|
|
GTEX-U3ZH
|
21-40
|
Male
|
GTEX-U3ZH-0726 |
Pancreas
|
PAXgene |
3
|
2 pieces ~9x8mm. Marked autolysis & saponification. Islets seen; one encircled, all badly autolyzed
|
Acceptable
|
|
GTEX-U3ZH
|
21-40
|
Male
|
GTEX-U3ZH-0826 |
Urinary bladder
|
PAXgene |
3
|
6 pieces ~7x5mm. Urothelium largely sloughed; a few residual foci up to ~80 microns thick
|
Acceptable
|
|
GTEX-U3ZH
|
21-40
|
Male
|
GTEX-U3ZH-0926 |
Prostate
|
PAXgene |
1
|
2 pieces ~7x6mm. Largely peripheral stroma/fat, adherent smooth muscle, minimal autolyzed glandular elements
|
Acceptable
|
|