GTEX-17EUY
|
21-40
|
Male
|
GTEX-17EUY-1426 |
Esophagus - mucosa
|
PAXgene |
0
|
6 pieces; includes small portion of muscularis (marked)
|
Acceptable
|
 |
GTEX-17EVP
|
41-50
|
Male
|
GTEX-17EVP-2026 |
Esophagus - mucosa
|
PAXgene |
3
|
6 pieces; sloughed & autolyzed mucosa
|
Unacceptable
|
 |
GTEX-17EVQ
|
61-70
|
Male
|
GTEX-17EVQ-1926 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, squamous mucosa up to ~0.5mm, ~50% thickness
|
Acceptable
|
 |
GTEX-17F96
|
61-70
|
Male
|
GTEX-17F96-2526 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; 1 large (1 mm) submucosal gland
|
Acceptable
|
 |
GTEX-17F97
|
51-60
|
Male
|
GTEX-17F97-1326 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces; epithelial sloughing
|
Acceptable
|
 |
GTEX-17F98
|
41-50
|
Female
|
GTEX-17F98-1726 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; prominent submucosal glands in most pieces
|
Acceptable
|
 |
GTEX-17F9E
|
51-60
|
Male
|
GTEX-17F9E-1926 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, squamous mucosa is ~0.15mm, ~2-5% thickness
|
Acceptable
|
 |
GTEX-17F9E
|
51-60
|
Male
|
GTEX-17F9E-5010 |
Esophagus - mucosa
|
Dry Ice |
|
1 piece, correleates with PFPE aliquot.
|
Acceptable
|
 |
GTEX-17F9Y
|
61-70
|
Female
|
GTEX-17F9Y-1726 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces squamous mucosa is ~ 150 microns, slouging, unusually poorly preserved
|
Acceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, muscular fragemntes/adipose tissue, not correct GTEx target or obvious switch
|
Unacceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-5010 |
Esophagus - mucosa
|
Dry Ice |
|
1 piece fibroadipose tissue, as with PGT aliquot, incorrect target--coorrelates.
|
Unacceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-0826 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces; epithelium partially sloughed
|
Acceptable
|
 |
GTEX-17HGU
|
51-60
|
Male
|
GTEX-17HGU-1426 |
Esophagus - mucosa
|
PAXgene |
0
|
6 pieces; in 2 pieces prominent submucosal glands and inflamed dilated squamous metaplastic ducts; well dissected
|
Acceptable
|
 |
GTEX-17HHE
|
41-50
|
Male
|
GTEX-17HHE-0926 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, squamous mucosa up to ~0.8mm, 20-30% thickness. Few submucosal mucus glands, encircled
|
Acceptable
|
 |
GTEX-17HHY
|
51-60
|
Male
|
GTEX-17HHY-1626 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces; largely sloughed epithelium; muscularis mucosae adequate for LCM
|
Unacceptable
|
 |
GTEX-17HII
|
51-60
|
Male
|
GTEX-17HII-1526 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, squamous mucosa ~0.5mm, ~ 50% thickness. Incidental submucosal mucus gland encircled
|
Acceptable
|
 |
GTEX-17JCI
|
61-70
|
Female
|
GTEX-17JCI-1226 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; well preserved; submucosal glands occupy 5-10% in each piece
|
Acceptable
|
 |
GTEX-17KNJ
|
51-60
|
Male
|
GTEX-17KNJ-1326 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, squamous mucosa is ~0.2-0.3mm, ~20-50% thickness. Submucosal mucus glands present, rep. delineated
|
Acceptable
|
 |
GTEX-17MF6
|
41-50
|
Male
|
GTEX-17MF6-1626 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces; autolyzed mucosa, severe chronic esophagitis; focus of glands (outlined)
|
Acceptable
|
 |
GTEX-17MFQ
|
21-40
|
Male
|
GTEX-17MFQ-0526 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, squamous mucosa up to ~0.5mm, 10-25% thickness
|
Acceptable
|
 |
GTEX-183FY
|
21-40
|
Male
|
GTEX-183FY-1526 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, squamous mucosa up to ~0.5mm, ~30% thickness
|
Acceptable
|
 |
GTEX-183WM
|
61-70
|
Female
|
GTEX-183WM-1726 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces, squamous mucosa up to ~ 0.25mm, early sloughing
|
Acceptable
|
 |
GTEX-18464
|
51-60
|
Male
|
GTEX-18464-1726 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; includes few clusters of submucosal glands
|
Unacceptable
|
 |
GTEX-18465
|
51-60
|
Male
|
GTEX-18465-1126 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; partially sloughed epithelium; foci of chronic esophagitis
|
Acceptable
|
 |
GTEX-18A66
|
61-70
|
Male
|
GTEX-18A66-1426 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, squamous mucosa is ~0.5mm, ~20-25% total thickness
|
Acceptable
|
 |