GTEX-16A39
|
21-40
|
Female
|
GTEX-16A39-0726 |
Uterus
|
PAXgene |
2
|
2 pieces; myometrium with scant glandular component in one piece (arrowed), ? lower uterine segment
|
Acceptable
|
 |
GTEX-16A39
|
21-40
|
Female
|
GTEX-16A39-0826 |
Vagina
|
PAXgene |
1
|
6 pieces; variable fragments with minimal squamous epithelium in 3, associated chronic inflammation (outlined), muscle
|
Unacceptable
|
 |
GTEX-16A39
|
21-40
|
Female
|
GTEX-16A39-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; surface epithelium desquamation and focal epithelial dissociation; squamous mucosa ~ 0.3mm thick; submucosal mucus glands and focal lymphocytic aggregates in submucosa; taken at GE junction (not target region 4 cm above), small leiomyoma
|
Acceptable
|
 |
GTEX-16A39
|
21-40
|
Female
|
GTEX-16A39-1326 |
Stomach
|
PAXgene |
1
|
6 pieces; well preserved gastric mucosa, lamina propria and muscularis (muscularis present in 2 of 6 pieces)
|
Acceptable
|
 |
GTEX-16BQI
|
21-40
|
Female
|
GTEX-16BQI-1426 |
Ileum
|
PAXgene |
3
|
6 pieces; all with muscularis and no lymphoid content in autolyzed mucosa
|
Unacceptable
|
 |
GTEX-16BQI
|
21-40
|
Female
|
GTEX-16BQI-1726 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; 0.6 mm submucosal gland in 1 piece [labeled]
|
Acceptable
|
 |
GTEX-16GPK
|
61-70
|
Male
|
GTEX-16GPK-1526 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; includes submucosal glands in 5 pieces; squamous mucosa up to 0.15mm
|
Acceptable
|
 |
GTEX-16MT9
|
61-70
|
Female
|
GTEX-16MT9-1826 |
Adrenal glands
|
PAXgene |
2
|
2 pieces; predominantly adrenal cortex with ~10% fat in one piece
|
Acceptable
|
 |
GTEX-16MT9
|
61-70
|
Female
|
GTEX-16MT9-2526 |
Ileum
|
PAXgene |
3
|
6 pieces; autolyzed mucosa with target lymphoid tissue in 4 pieces (arrowed)
|
Acceptable
|
 |
GTEX-16MT9
|
61-70
|
Female
|
GTEX-16MT9-2726 |
Vagina
|
PAXgene |
1
|
6 pieces; congested fibromuscular stroma and skeletal muscle fragments (arrowed) only in this section
|
Acceptable
|
 |
GTEX-16MTA
|
51-60
|
Male
|
GTEX-16MTA-1526 |
Ileum
|
PAXgene |
1
|
6 pieces; mucosa and submucosa with good lymphoid tissue in 3 of 6
|
Acceptable
|
 |
GTEX-16MTA
|
51-60
|
Male
|
GTEX-16MTA-2026 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces; central defect in 1 piece, otherwise includes minimal fat/vessels
|
Acceptable
|
 |
GTEX-16MTA
|
51-60
|
Male
|
GTEX-16MTA-2126 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, central defects in both (?poor fixation)
|
Acceptable
|
 |
GTEX-16NGA
|
41-50
|
Female
|
GTEX-16NGA-0826 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 pieces; mature adipose tissue and lobular and ductal structures embedded in fibrotic stroma with focal area of periductal hyalinization (outlined)
|
Acceptable
|
 |
GTEX-16NGA
|
41-50
|
Female
|
GTEX-16NGA-1426 |
Esophagus - mucosa
|
PAXgene |
0
|
6 pieces; target squamus mucosa and muscularis with submucosal glands in 4 of 6 pieces (outlined)
|
Acceptable
|
 |
GTEX-16NPV
|
51-60
|
Female
|
GTEX-16NPV-2326 |
Ovary
|
PAXgene |
1
|
2 pieces; a few small follicles in outer rim; core contains corpora albicantia & vessels
|
Acceptable
|
 |
GTEX-16NPX
|
51-60
|
Male
|
GTEX-16NPX-2026 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces, mainly fat/vasuclar tissue, endstage nephritis/dystrophic appearing in trace residual kidney
|
Unacceptable
|
 |
GTEX-16XZY
|
61-70
|
Male
|
GTEX-16XZY-0126 |
Spleen
|
PAXgene |
0
|
2 pieces, fragmented; congestion, portion of capsule in 1 piece
|
Acceptable
|
 |
GTEX-16XZY
|
61-70
|
Male
|
GTEX-16XZY-0626 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 pieces; one consists of 60% mature adipose tissue/40% fibrous tissue, other 40% mature adipose tissue/60% ductal structures embedded in fibrous stroma
|
Acceptable
|
 |
GTEX-16XZZ
|
61-70
|
Male
|
GTEX-16XZZ-0126 |
Skin, leg
|
PAXgene |
1
|
6 pieces; excessive subcutaneous fat included in sample; makes up 50% of area
|
Acceptable
|
 |
GTEX-16XZZ
|
61-70
|
Male
|
GTEX-16XZZ-0326 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces; 10% peripheral fat in 1 piece
|
Acceptable
|
 |
GTEX-16XZZ
|
61-70
|
Male
|
GTEX-16XZZ-0426 |
Artery - tibial
|
PAXgene |
1
|
2 pieces; focal intimal plaque on 1; small (0.1 mm) medial calcium deposit in each; well trimmed
|
Acceptable
|
 |
GTEX-16XZZ
|
61-70
|
Male
|
GTEX-16XZZ-1026 |
Atrial appendage
|
PAXgene |
1
|
2 pieces; 10% adipose in 1; 30% fibrous content in other
|
Acceptable
|
 |
GTEX-16XZZ
|
61-70
|
Male
|
GTEX-16XZZ-2226 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces; no sign of chronic disease; tubules in varying state of preservation
|
Acceptable
|
 |
GTEX-16XZZ
|
61-70
|
Male
|
GTEX-16XZZ-2526 |
Ileum
|
PAXgene |
3
|
6 pieces; virtually no lymphoid tissue in strips of autolyzed mucosa
|
Unacceptable
|
 |