GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0626 |
Nerve - tibial
|
PAXgene |
2
|
2 ~6x4.5mm aliquots, both with ~6mm rim of fat.
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0826 |
Thyroid gland
|
PAXgene |
2
|
2 ~8x6.5mm aliquots
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1026 |
Lung
|
PAXgene |
2
|
2 ~8x6.5mm aliquots, areas of interstitial fibrosis/inflammation
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1326 |
Esophagus - mucosa
|
PAXgene |
2
|
6 ~7x1mm pieces. Squamous mucosa focally sloughing, ~ 40-50% of thickness
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1526 |
Pancreas
|
PAXgene |
2
|
2 ~10x7mm aliquots, relatively clean, mild peripancreatic saponification
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2126 |
Urinary bladder
|
PAXgene |
2
|
6 ~8 x 4mm pieces, urothelium 95% sloughed. Wall is ~50% fat/50%detrussor muscle
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2526 |
Fallopian tube
|
PAXgene |
2
|
2 ~6x4mm aliquots. Mucosa ~ 20% total; badly autolyzed
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2826 |
Brain - cerebellum
|
PAXgene |
2
|
4 ~6x4 fragmented aliquots
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2926 |
Brain - cortex
|
PAXgene |
2
|
4 fragmented aliquots, ~ 6x4mm
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-3026 |
Pituitary gland
|
PAXgene |
2
|
Fragmented ~9x7mm aliquot
|
Acceptable
|
|
GTEX-Q2AH
|
21-40
|
Male
|
GTEX-Q2AH-1326 |
Urinary bladder
|
PAXgene |
2
|
6 pieces up to 9.6x5 mm; epithelium variably sloughed; marked submucosal edema
|
Acceptable
|
|
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-0226 |
Spleen
|
PAXgene |
2
|
2 ~8.5x7.5mm aliquots
|
Acceptable
|
|
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1026 |
Stomach
|
PAXgene |
2
|
6 ~7.5x3mm pieces. Mucosa is fairly well preserved, ~20-25% of thickness
|
Acceptable
|
|
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1226 |
Urinary bladder
|
PAXgene |
2
|
6 ~10x3mm pieces. Urothelium partially sloughed, variably preserved, 1-2 % of thickness
|
Acceptable
|
|
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1426 |
Vagina
|
PAXgene |
2
|
6 ~8x2.5mm pieces. Squamous mucosa is ~ 5-7% of thickness
|
Acceptable
|
|
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0826 |
Urinary bladder
|
PAXgene |
2
|
6 pieces up to 9.6x4.8 mm; 3 have mucosa but largely sloughed, 3 only muscularis
|
Acceptable
|
|
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-1126 |
Cervix - endocervix
|
PAXgene |
2
|
4 pieces up to ~6x4.5 mm; 2 have apparent glands
|
Acceptable
|
|
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-1626 |
Colon, transverse
|
PAXgene |
2
|
6 pieces up to ~11x4.7 mm
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-0926 |
Lung
|
PAXgene |
2
|
2 ~7x6mm aliquots, evidence of chronic pulmonary congestion (aggregates of hemosiderin-laden macrophages)
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1126 |
Liver
|
PAXgene |
2
|
2 ~9x7mm aliquots. Established cirrhosis with steatohepatitis, diffuse
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1426 |
Esophagus - mucosa
|
PAXgene |
2
|
6 ~6x2mm pieces. Squamous mucosa is unusually poorly preserved with superficial sloughing; it is ~ 5-10% of thickness
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1526 |
Spleen
|
PAXgene |
2
|
2 ~7.5x6.5mm aliquots, foci of adherent extraspenic vascular/fibrous tissue present (~4x1mm)
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1626 |
Adrenal glands
|
PAXgene |
2
|
2 ~17x8mm aliquots, each with a 1-2mm rim of fat surrounding the majority of each
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1726 |
Kidney - cortex
|
PAXgene |
2
|
6 ~6.5x3.5mm pieces. Tubules more autolyzed than glomeruli
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1826 |
Kidney - cortex
|
PAXgene |
2
|
2 ~8x7mm aliquots—renal cortex, not medulla
|
Acceptable
|
|