GTEX-PVOW
|
21-40
|
Male
|
GTEX-PVOW-2026 |
Stomach
|
PAXgene |
2
|
6 pieces,~7.5x2.5mm; mucosa 0.8mm
|
Acceptable
|
 |
GTEX-PVOW
|
21-40
|
Male
|
GTEX-PVOW-2126 |
Testis
|
PAXgene |
2
|
2 piececs,~8x6mm; spermatogenesis
|
Acceptable
|
 |
GTEX-PVOW
|
21-40
|
Male
|
GTEX-PVOW-2426 |
Urinary bladder
|
PAXgene |
2
|
4 pieces,~8x2.5 mm; surface largely sloughed
|
Acceptable
|
 |
GTEX-PVOW
|
21-40
|
Male
|
GTEX-PVOW-2526 |
Brain - cortex
|
PAXgene |
2
|
4 pieces,~5-6x3mm; tissue tears
|
Acceptable
|
 |
GTEX-PVOW
|
21-40
|
Male
|
GTEX-PVOW-2726 |
Pituitary gland
|
PAXgene |
2
|
1 piece, 6x5.6 mm
|
Acceptable
|
 |
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-0126 |
Spleen
|
PAXgene |
2
|
2 ~9x7.5mm aliquots
|
Acceptable
|
 |
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-0226 |
Adrenal glands
|
PAXgene |
2
|
2 ~6.5x4.5mm aliquots; both with partially autolyzed medulla and well-preserved cortex
|
Acceptable
|
 |
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-0526 |
Lung
|
PAXgene |
2
|
2 ~ 8.5x7mm aliquots, one with focal fibrosis/consolidation—pending slide review
|
Acceptable
|
 |
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-0926 |
Colon, transverse
|
PAXgene |
2
|
6 ~4.5x3.5mm pieces; mucosa variably preserved, 5-10% of thickness
|
Acceptable
|
 |
GTEX-PWCY
|
21-40
|
Female
|
GTEX-PWCY-1026 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, ~6x2 mm; mucosa varies in preservation from good to poor
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0226 |
Mammary tissue (breast)
|
PAXgene |
2
|
2 ~9x6mm aliquots, few atrophic ductal structures; one aliquot with extensive ‘contaminating’ skeletal muscle (?pectoralis)
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-1026 |
Brain - cerebellum
|
PAXgene |
2
|
4 ~6x5mm pieces, granular layer more autolyzed
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-1226 |
Pituitary gland
|
PAXgene |
2
|
A ~ 7x6.6 mm aliquot, with a 6.5x4.2 mm adenohypophysis and a ~3.2x2.5mm neurohypophysis/stalk fragment
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-1426 |
Vagina
|
PAXgene |
2
|
6 ~9x3mm pieces. Squamous mucosa has sloughed from ~50% of tissue; where present, is ~1% of thickness
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-1726 |
Lung
|
PAXgene |
2
|
2 ~9.5x8mm aliquots; mild congestion, occasional prominent aggregates of hemosiderin-laden macrophages
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-1826 |
Liver
|
PAXgene |
2
|
2 ~ 8x8mm aliquots, ? fibrosis; request Masson
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-2026 |
Pancreas
|
PAXgene |
2
|
2 ~8.5x8mm aliquots, extensive saponification of peripancreatic fat, ~25% of aliquots
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-2126 |
Spleen
|
PAXgene |
2
|
2 ~8.5x6.5mm aliquots, areas of poor/under-fixation
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-2426 |
Adrenal glands
|
PAXgene |
2
|
2 ~ 15x5mm aliquots, minute amounts of adherent fat
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-2626 |
Nerve - tibial
|
PAXgene |
2
|
2 aliquots, ~7x3mm, ~20% interspersed and adherent fat
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-2726 |
Urinary bladder
|
PAXgene |
2
|
6 pieces, ~8x4mm. Urothelium completely sloughed, detrusor muscle only
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-3026 |
Cervix - endocervix
|
PAXgene |
2
|
4 aliquots ~6x5mm. Mucosa badly autolyzed
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-3126 |
Uterus
|
PAXgene |
2
|
2 ~ 8.5x7mm aliquots, few foci of completely autolyzed mucosa/adenomyosis; mainly myometrium
|
Acceptable
|
 |
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-0126 |
Spleen
|
PAXgene |
2
|
2 ~10mmx10mm aliquots, central under-fixation with holes/tears
|
Acceptable
|
 |
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-1326 |
Colon, transverse
|
PAXgene |
2
|
6 ~ 8x3.75mm pieces; mucosa is ~ 5-10% of thickness
|
Acceptable
|
 |