GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-1226 |
Skin, leg
|
PAXgene |
1
|
6 pieces up to 7x4 mm; thin remnant of subcutaneous fat
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-1326 |
Adipose tissue
|
PAXgene |
1
|
2 pieces 9x8 & 9x7 mm; central holes (unfixed); ~10% fibrous stroma
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-1426 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces 10x7 & 8x6 mm; minimal adipose
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-1526 |
Artery - tibial
|
PAXgene |
0
|
2 pieces 5x2 & 3x2 mm; larger with an artery and vein; other with artery. clean, no adherent adipose, no lesions
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-1626 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces 5x3 & 2x2 mm; minimal adipose
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-0126 |
Skin, leg
|
PAXgene |
0
|
6 pieces ~ 6x3mm. Squamous epithelium is ~2-3% of thickness
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-0226 |
Adipose tissue
|
PAXgene |
0
|
2 ~8x7 mm pieces
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-0326 |
Coronary artery
|
PAXgene |
1
|
1 aliquot ~3x3mm, 90+% fat/myocardium surrounding 0.5x1mm vessel, too small for accurate isolation
|
Unacceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-0426 |
Heart
|
PAXgene |
1
|
2 pieces, ~6x6mm, mimimal ischemic changes
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-0526 |
Lung
|
PAXgene |
1
|
2 pieces ~9x4mm, mild-moderate emphysematous changes
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-0626 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, ~8x7mm. Good clean specimens
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-0726 |
Aorta
|
PAXgene |
1
|
6 pieces, ~8x1mm, no atherosclerosis
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-0826 |
Esophagus - mucosa
|
PAXgene |
0
|
6 pieces ~ 5x2mm, squamous mucosa is ~10-15% thickness
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-0926 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces ~7x7mm
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-1026 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, ~ 2mm d. Good clean specimens, no atherosclerosis
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-1126 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, ~4mm d. Good clean specimens
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-1226 |
Liver
|
PAXgene |
1
|
2 pieces ~6x6mm, no steatosis
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-1326 |
Spleen
|
PAXgene |
2
|
2 pieces ~8x6mm
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-1426 |
Pancreas
|
PAXgene |
3
|
2 pieces ~7x7mm, marked autolysis, post mortem saponification
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-1526 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces ~ 10x8mm. Large areolar ductal units, fibrotic stroma
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-1626 |
Adrenal glands
|
PAXgene |
1
|
2 pieces, all fat, not adrenal, not suitable for analysis
|
Unacceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-1726 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces ~6x3mm, tubules autolyzed
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-1826 |
Kidney - medulla
|
PAXgene |
2
|
2 pieces ~ 7x7mm; all medulla!!! Tubules autolyzed
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-1926 |
Vagina
|
PAXgene |
1
|
6 pieces, ~7x3mm, squamous mucosa is ~5-10% thickness
|
Acceptable
|
|
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-2026 |
Ovary
|
PAXgene |
1
|
2 pieces ~7x6mm. Oocytes present, one cumulous oophorous noted, + hemorrhagic cyst.
|
Acceptable
|
|