GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1326 |
Artery - tibial
|
PAXgene |
2
|
2 ~ 4x3mm pieces; 50% of aliquot is fat/connective tissue
|
Acceptable
|
|
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1526 |
Esophagus - muscularis
|
PAXgene |
2
|
6 ~9x3.5mm pieces. Areas of under-fixation, tears and holes
|
Acceptable
|
|
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1826 |
Kidney - cortex
|
PAXgene |
2
|
6 ~8x3mm pieces. Glomeruli present in 5 of 6 aliquots. Autolysis worse in tubules.
|
Acceptable
|
|
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1926 |
Kidney - cortex
|
PAXgene |
2
|
2 ~9x8mm pieces. Cortex, not medulla; numerous glomeruli1
|
Acceptable
|
|
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2026 |
Urinary bladder
|
PAXgene |
2
|
6 ~8x3.5mm pieces. Urothelium completely sloughed
|
Acceptable
|
|
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2126 |
Cervix - ectocervix
|
PAXgene |
2
|
5 ~ 5x3mm pieces, 2 with partially sloughed squamous mucosa, ~5-10% of aliquot thickness
|
Acceptable
|
|
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2226 |
Cervix - endocervix
|
PAXgene |
2
|
2 (stroma); 4 ~5x3mm pieces; no visible mucosal/glands
|
Acceptable
|
|
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2526 |
Stomach
|
PAXgene |
2
|
2-3 (mucosa);1-2 (muscularis), 6 ~10x2mm pieces. Mucosa is ~25% of aliquot thickness; near-total autolysis
|
Acceptable
|
|
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2626 |
Colon, transverse
|
PAXgene |
2
|
3 (mucosa); 1-2 (muscularis); 6 ~ 6.5x1.5mm pieces. Epithelium totally autolyzed; mucosa partially sloughed
|
Acceptable
|
|
GTEX-PLZ5
|
41-50
|
Male
|
GTEX-PLZ5-0226 |
Spleen
|
PAXgene |
2
|
2 ~8x5mm pieces
|
Acceptable
|
|
GTEX-PLZ5
|
41-50
|
Male
|
GTEX-PLZ5-1226 |
Stomach
|
PAXgene |
2
|
6 ~10x4mm pieces; mucosa is ~25% specimen thickness but with partial-total autolysis
|
Acceptable
|
|
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-0926 |
Urinary bladder
|
PAXgene |
2
|
6 pieces, ~5 x 7mm, mucosa partly sloughed
|
Acceptable
|
|
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-1826 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, ~6x3.5mm, poorly oriented with only minimal mucosa visible
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-0126 |
Testis
|
PAXgene |
2
|
2 ~ 9x7mm pieces, a ~1x5mm scar in one aliquot. Spermatogenesis appears arrested
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-1226 |
Lung
|
PAXgene |
2
|
2 pieces, ~ 9.5x7.5mm –at least one aliquot appears peripheral (contains fat)
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-1726 |
Pancreas
|
PAXgene |
2
|
~9x6mm pieces, about 30% fat, moderate postmortem saponification
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-2426 |
Brain - cerebellum
|
PAXgene |
2
|
4 ~ 6x3mm pieces. Granular layer more autolyzed
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-2626 |
Pituitary gland
|
PAXgene |
2
|
1 ~ 5x4mm aliquot
|
Acceptable
|
|
GTEX-PSDG
|
41-50
|
Male
|
GTEX-PSDG-2026 |
Urinary bladder
|
PAXgene |
2
|
6 pieces, ~5 x 7mm, mucosa partly sloughed
|
Acceptable
|
|
GTEX-PVOW
|
21-40
|
Male
|
GTEX-PVOW-1026 |
Lung
|
PAXgene |
2
|
2 pieces,~7x4mm; congested
|
Acceptable
|
|
GTEX-PVOW
|
21-40
|
Male
|
GTEX-PVOW-1126 |
Spleen
|
PAXgene |
2
|
2 pieces,~7mm and 6mm cubed; capsule on one surface; moderately congested
|
Acceptable
|
|
GTEX-PVOW
|
21-40
|
Male
|
GTEX-PVOW-1326 |
Thyroid gland
|
PAXgene |
2
|
2 pieces,~8.5 and 10x7mm
|
Acceptable
|
|
GTEX-PVOW
|
21-40
|
Male
|
GTEX-PVOW-1726 |
Adrenal glands
|
PAXgene |
2
|
2 pieces,~9x2.6mm; 30-40% periadrenal fat
|
Acceptable
|
|
GTEX-PVOW
|
21-40
|
Male
|
GTEX-PVOW-1826 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces,~5x5mm; no scarred glomeruli; moderately congested
|
Acceptable
|
|
GTEX-PVOW
|
21-40
|
Male
|
GTEX-PVOW-1926 |
Kidney - medulla
|
PAXgene |
2
|
2 pieces,~11x6 mm half cortex; one piece 6x7mm 10% cortex; collecting ducts severely autolyzed
|
Acceptable
|
|