GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0626 |
Artery - tibial
|
PAXgene |
1
|
2 pieces, 3x1 & 3x2mm; ~2 mm clean arteries & 1 small branch; free of adipose;
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0726 |
Skin, leg
|
PAXgene |
1
|
6 pieces, 7x3mm; largely free of subcutaneous adipose
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0826 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, 6.5x5.5 & 8x6mm; cassette indentations
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0926 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces; 10x5 & 10x6mm; free of adipose
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1026 |
Testis
|
PAXgene |
2
|
2 pieces, 7x7 & 6x6mm; reduced spermatogenesis; patchy tubular fibrosis
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1126 |
Lung
|
PAXgene |
1
|
2 pieces, 8x7 & 10x7.5mm; scattered hemorrhages; pleura present (avoid)
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1226 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 8x2mm; good specimen
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1326 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, up to 8x4mm; good specimen, minimal adipose
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1426 |
Liver
|
PAXgene |
1
|
2 pieces, 8x7 & 6x6mm; no fat, fibrosis or excess congestion
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1526 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 9x1.5mm; minimal plaque; adipose ee adventitia
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1626 |
Spleen
|
PAXgene |
1
|
2 pieces, 8.5x7 & 9x8mm; moderate congestion
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1726 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, up to 8x2mm; all with good muscularis and no adipose
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1826 |
Omentum
|
PAXgene |
0
|
2 pieces, 10x7 & 9x7mm; well fixed, no artifacts
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1926 |
Pancreas
|
PAXgene |
1
|
2 pieces, 10x8 & 7x5mm;20-50% adipose intermixed with parenchyma; few islets
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-2026 |
Ileum
|
PAXgene |
1
|
6 pieces, up to 10x3mm; 3 pieces have good lymphoid tissue and some muscularis; 3 pieces have only muscularis; mucosa largely sloughed
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-2126 |
Stomach
|
PAXgene |
2
|
6 pieces, up to 9x2mm; mucosa moderately autolyzed
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-2226 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, up to 10x2mm; poor preservation of mucosa; muscularis better preserved
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-2326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 10x9 & 10x10mm; larger has ducts in fibrous tissue; both 90% adipose
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-2426 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, up to 7x2mm; all have mucosa and muscularis; mucosa largely autolyzed
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-2526 |
Prostate
|
PAXgene |
2
|
2 pieces, 9x8.5 & 9x7mm
|
Acceptable
|
|
GTEX-W5X1
|
41-50
|
Female
|
GTEX-W5X1-0126 |
Liver
|
PAXgene |
1
|
2 pieces, 10x7 & 9x7mm. Central vein congestion and central lobular atrophy.
|
Acceptable
|
|
GTEX-W5X1
|
41-50
|
Female
|
GTEX-W5X1-0226 |
Pancreas
|
PAXgene |
2
|
2 pieces, 10x9 & 11x11mm. Moderate fibrosis of endocrine and exocrine tissue. (Diabetic history.)
|
Acceptable
|
|
GTEX-W5X1
|
41-50
|
Female
|
GTEX-W5X1-0326 |
Spleen
|
PAXgene |
1
|
2 pieces, 11x8 & 11x7mm. Slight congestion and good lymphoid tissue.
|
Acceptable
|
|
GTEX-W5X1
|
41-50
|
Female
|
GTEX-W5X1-0426 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, 9x8 & 10x8mm. Good uniform parenchyma.
|
Acceptable
|
|
GTEX-W5X1
|
41-50
|
Female
|
GTEX-W5X1-0526 |
Lung
|
PAXgene |
1
|
2 pieces, 11x7 & 8x8mm. Heart failure cells. Focal interstitial fibrosis.
|
Acceptable
|
|