GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-0326 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces, ~7x2mm. Multifocal malignancy, favor primary renal papillary renal cell. Can't be used ("unacceptable") for GTEx but should be retained as potentially valuable for future research.
|
Unacceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-0426 |
Pancreas
|
PAXgene |
1
|
2 pieces ~8x7mm. Islets well visualized, representative ones encircled. Minimal fat/saponification; well preserved specimen
|
Acceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-0526 |
Urinary bladder
|
PAXgene |
2
|
4 pieces ~5x3mm, 2 with partallly sloughed urothelium, where present <1% of thickness
|
Acceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-0626 |
Kidney - medulla
|
PAXgene |
1
|
2 pieces, ~8x5mm. NOTE: Each aliquot is ~40% cortex
|
Acceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-0726 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, ~8x5mm, NOTE: one with adherent skin
|
Acceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-0826 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, ~8x6mm, minimal interstitial fat
|
Acceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-0926 |
Stomach
|
PAXgene |
1
|
6 pieces ~8x3mm. Mucosa well-presereved but only focally present in 4 aliquots, where prsent ~20% of thickness
|
Acceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-1026 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, ~2.5mm d. Good clean specimen
|
Acceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-1126 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, ~3.5mm, good clean specimen, minimal fat
|
Acceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-1226 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces 7x4mm. No mucosa, just muscle. May be used once relabeled
|
Acceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-1326 |
Colon, transverse
|
PAXgene |
1
|
6 pieces ~7x4mm. Mucosa unusually well-preserved; ~10% of thickness
|
Acceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-1426 |
Prostate
|
PAXgene |
1
|
2 pieces, no prostate present, only fat/vascular tissue, unknown provenance.
|
Unacceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-1526 |
Testis
|
PAXgene |
2
|
2 pieces, ~8x5mm. Spermatogenesis is present but poorly preserved
|
Acceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-1626 |
Skin, leg
|
PAXgene |
0
|
6 pieces ~7x3mm. Squamous epithelium is ~2-3% of thickness
|
Acceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-1726 |
Liver
|
PAXgene |
1
|
2 pieces ~8x7mm. Minimal steatosis
|
Acceptable
|
|
GTEX-TKQ2
|
41-50
|
Male
|
GTEX-TKQ2-1826 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 7x7mm. Ductal elements (rare) present, representive ones encircled.
|
Acceptable
|
|
GTEX-TML8
|
41-50
|
Female
|
GTEX-TML8-0126 |
Spleen
|
PAXgene |
1
|
2 pieces 9x8 & 9x8 mm; moderate congestion
|
Acceptable
|
|
GTEX-TML8
|
41-50
|
Female
|
GTEX-TML8-0226 |
Thyroid gland
|
PAXgene |
1
|
2 pieces 7x6 & 9x7 mm; uniform structure
|
Acceptable
|
|
GTEX-TML8
|
41-50
|
Female
|
GTEX-TML8-0326 |
Lung
|
PAXgene |
1
|
2 pieces: 9x7 & 8x5 mm; panacinar emphysema, no fibrosis or inflammation
|
Acceptable
|
|
GTEX-TML8
|
41-50
|
Female
|
GTEX-TML8-0426 |
Aorta
|
PAXgene |
1
|
6 pieces up to 7x1 mm; adventitial fibrous tissue up to 2 mm thick
|
Acceptable
|
|
GTEX-TML8
|
41-50
|
Female
|
GTEX-TML8-0526 |
Pancreas
|
PAXgene |
1
|
2 pieces 7x5 & 10x6 mm; good acinar and islet preservation; one piece has ~20% adipose
|
Acceptable
|
|
GTEX-TML8
|
41-50
|
Female
|
GTEX-TML8-0626 |
Urinary bladder
|
PAXgene |
1
|
6 pieces up to 7x5 mm; partly sloughed mucosa
|
Acceptable
|
|
GTEX-TML8
|
41-50
|
Female
|
GTEX-TML8-0726 |
Cervix - endocervix
|
PAXgene |
1
|
2 pieces 9x7 & 8x6 mm; good glands and surface epithelium
|
Acceptable
|
|
GTEX-TML8
|
41-50
|
Female
|
GTEX-TML8-0826 |
Cervix - ectocervix
|
PAXgene |
1
|
2 pieces 7x3 & 6x3 mm; limited mucosa on long piece
|
Acceptable
|
|
GTEX-TML8
|
41-50
|
Female
|
GTEX-TML8-0926 |
Ovary
|
PAXgene |
1
|
2 pieces 9x6 & 9x6 mm; corppora albicantia
|
Acceptable
|
|