Moderate autolysis of tubules. Moderate interstitial fibrosis/nephrosclerosis
Acceptable
GTEX-NPJ7
61-70
Female
GTEX-NPJ7-0826
Adrenal glands
PAXgene
2
Moderate autolysis (“score 2”)—cortex is 90+% of specimen
Acceptable
GTEX-NPJ7
61-70
Female
GTEX-NPJ7-1826
Lung
PAXgene
2
Mild congestion
Acceptable
GTEX-NPJ7
61-70
Female
GTEX-NPJ7-2126
Esophagus - mucosa
PAXgene
2
No mucosa present other than 2 microfoci. (See Request)
Acceptable
GTEX-NPJ7
61-70
Female
GTEX-NPJ7-2326
Kidney - cortex
PAXgene
2
End stage glomerulosclerosis with 100% sclerotic glomeruli; moderate autolysis (“score 2”); nodular sclerosis, probable diabetic. (See Request)
Acceptable
GTEX-NPJ8
21-40
Male
GTEX-NPJ8-0826
Adrenal glands
PAXgene
2
Cortex is ~75% of specimen, 25% adipose
Acceptable
GTEX-NPJ8
21-40
Male
GTEX-NPJ8-1126
Urinary bladder
PAXgene
2
1-2 cell layers of basal urothelium present, autolyzed. Urothelial thickness ave 15 microns or 0.3% of total specimen thickness.
Acceptable
GTEX-NPJ8
21-40
Male
GTEX-NPJ8-2326
Kidney - medulla
PAXgene
2
Tubular epithelium is autolyzed
Acceptable
GTEX-NPJ8
21-40
Male
GTEX-NPJ8-2426
Prostate
PAXgene
2
Glands poorly preserved
Acceptable
GTEX-O5YT
21-40
Male
GTEX-O5YT-1526
Stomach
PAXgene
2
50% mucosa is hemorrhagic
Acceptable
GTEX-O5YU
51-60
Male
GTEX-O5YU-1326
Pancreas
PAXgene
2
parenchymal hyaline sclerosis 25%; fat is 50% of aliquot
Acceptable
GTEX-O5YU
51-60
Male
GTEX-O5YU-2026
Colon, transverse
PAXgene
2
considerable glandular autolysis
Acceptable
GTEX-O5YU
51-60
Male
GTEX-O5YU-2226
Prostate
PAXgene
2
15x8 mm aliquot
Acceptable
GTEX-O5YV
61-70
Female
GTEX-O5YV-1926
Stomach
PAXgene
2
2 (varies from 1-3)
Acceptable
GTEX-OHPJ
61-70
Male
GTEX-OHPJ-1226
Spleen
PAXgene
2
Appears underfixed, many tears/holes
Acceptable
GTEX-OHPJ
61-70
Male
GTEX-OHPJ-1726
Stomach
PAXgene
2
Mucosa is ~25% of specimen thickness
Acceptable
GTEX-OHPK
51-60
Female
GTEX-OHPK-0526
Lung
PAXgene
2
looks like severe aspiration pneumonia. Sloughing of alveolar epithelium is probably postmortem. There are large cells vs. aspirated material throughout. Aliquot is oversized (14.7x13.7mm). Central part is poorly fixed. REFIX.
Acceptable
GTEX-OHPK
51-60
Female
GTEX-OHPK-0926
Spleen
PAXgene
2
red pulp is falling apart. white pulp is reasonable. Aliquot is oversized (15x10mm). Central part is poorly fixed. REFIX.
Acceptable
GTEX-OHPK
51-60
Female
GTEX-OHPK-1426
Colon, transverse
PAXgene
2
loss of superficial colonic mucosa
Acceptable
GTEX-OHPL
61-70
Female
GTEX-OHPL-1426
Colon, transverse
PAXgene
2
some areas better preserved than others
Acceptable
GTEX-OHPL
61-70
Female
GTEX-OHPL-2126
Cervix - ectocervix
PAXgene
2
High grade dysplasia in one piece with epithelium, partly sloughed