GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-0426 |
Colon, transverse
|
PAXgene |
1
|
6 pieces up to 8x3 mm; ~540um thick mucosa; muscularis propria on 4 pieces
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-0526 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces up to 6.7x2.8 mm’ 3 pieces with hyperplastic squamous epithelium, 2 with fundic-type glandular epithelium; 1 with glandular and squamous epi.; probable reflux changes; no intestinal metaplasia
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-0626 |
Esophagus - muscularis
|
PAXgene |
0
|
6 pieces up to 8.7x4.3 mm
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-0726 |
Stomach
|
PAXgene |
1
|
6 pieces up to 7x2 mm; good oxyntic mucosa on all, up to 0.8 mm; foveolar surface largely sloughed
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-0826 |
Urinary bladder
|
PAXgene |
1
|
6 pieces up to 7 x2.7 mm; good mucosa; muscle in one piece; edematous stroma
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-0926 |
Prostate
|
PAXgene |
1
|
2 pieces ~9x9mm each; no significant hyperplasia
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-1026 |
Testis
|
PAXgene |
1
|
2 pieces 14x7 & 9x12 mm; spermatogenesis present
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-1126 |
Skin, leg
|
PAXgene |
1
|
6 pieces up to 9x3 mm; epidermis 66um thick
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-1226 |
Adipose tissue
|
PAXgene |
1
|
2 pieces ~12x7 & 9x9 mm; up to 10% centrally empty (unfixed or fractured)
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-1326 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces: 15x11 & 9.5x9.5 mm; ~5% internal fat
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-1426 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces ~3x1.5, & 2x2 mm; embedded in ~30% stroma & fat
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-1526 |
Artery - tibial
|
PAXgene |
1
|
2 pieces ~3x2 mm; 2 arteries and 1 vein; tissue tears (histologic); embedded in ~40% stroma
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-1626 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces, ~6x2.5 mm; numerous red cell casts
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-1726 |
Kidney - cortex
|
PAXgene |
1
|
2 pieces ~7.5x6 mm; cortex, not medulla, except for 10% of 1 piece; numerous red cell casts
|
Acceptable
|
|
GTEX-QV31
|
21-40
|
Male
|
GTEX-QV31-0126 |
Spleen
|
PAXgene |
2
|
2 8x6mm aliquots
|
Acceptable
|
|
GTEX-QV31
|
21-40
|
Male
|
GTEX-QV31-0226 |
Pancreas
|
PAXgene |
1
|
2 ~7x6mm aliquots, good clean specimens with no peripancreatic fat; ~5% interstitial fat/fibrous tissue
|
Acceptable
|
|
GTEX-QV31
|
21-40
|
Male
|
GTEX-QV31-0326 |
Aorta
|
PAXgene |
0
|
6 ~10x1.5mm pieces, a few with adherent layer of ~0.5mm fibrous tissue on serosal edges
|
Acceptable
|
|
GTEX-QV31
|
21-40
|
Male
|
GTEX-QV31-0426 |
Esophagus - mucosa
|
PAXgene |
0
|
6 ~5x4mm pieces. Non keratinizing squamous mucosa is ~10-20% of thickness
|
Acceptable
|
|
GTEX-QV31
|
21-40
|
Male
|
GTEX-QV31-0526 |
Esophagus - muscularis
|
PAXgene |
0
|
6 ~6x4mm pieces
|
Acceptable
|
|
GTEX-QV31
|
21-40
|
Male
|
GTEX-QV31-0626 |
Stomach
|
PAXgene |
1
|
6 ~6x4mm pieces; mucosa well-preserved, ~25% of thickness in most pieces
|
Acceptable
|
|
GTEX-QV31
|
21-40
|
Male
|
GTEX-QV31-0726 |
Thyroid gland
|
PAXgene |
0
|
2 ~9x8mm aliquots, one with ~1.5mm layer of peripheral fat along one edge
|
Acceptable
|
|
GTEX-QV31
|
21-40
|
Male
|
GTEX-QV31-0826 |
Colon, transverse
|
PAXgene |
1
|
6 ~7.5x3mm pieces; mucosa well-preserved, ~15-40% of thickness
|
Acceptable
|
|
GTEX-QV31
|
21-40
|
Male
|
GTEX-QV31-0926 |
Urinary bladder
|
PAXgene |
1
|
6 8x4.5mm pieces. Urothelium reasonably well-preserved, 1-2% of thickness.
|
Acceptable
|
|
GTEX-QV31
|
21-40
|
Male
|
GTEX-QV31-1026 |
Prostate
|
PAXgene |
1
|
2 ~9.5x7mm aliquots. Glands well-preserved
|
Acceptable
|
|
GTEX-QV31
|
21-40
|
Male
|
GTEX-QV31-1126 |
Testis
|
PAXgene |
1
|
2 7x6mm aliquots. Robust spermatogenesis
|
Acceptable
|
|