GTEX-16NGA
|
41-50
|
Female
|
GTEX-16NGA-1126 |
Ileum
|
PAXgene |
1
|
6 pieces; mucosa and abundant target mucosal lymphoid tissue, few foci of muscularis
|
Acceptable
|
 |
GTEX-16NPV
|
51-60
|
Female
|
GTEX-16NPV-2826 |
Ileum
|
PAXgene |
3
|
4 pieces; well dissected, but too autolyzed
|
Unacceptable
|
 |
GTEX-16NPX
|
51-60
|
Male
|
GTEX-16NPX-2326 |
Ileum
|
PAXgene |
3
|
5 pieces, advanced autolysis, insufficient lymphoid aggregates to warrant analysis
|
Unacceptable
|
 |
GTEX-16XZY
|
61-70
|
Male
|
GTEX-16XZY-1626 |
Ileum
|
PAXgene |
2
|
6 pieces; variable representation of autolyzed mucosa, excellent lymphoid component, and abundant muscularis
|
Unacceptable
|
 |
GTEX-16XZZ
|
61-70
|
Male
|
GTEX-16XZZ-2526 |
Ileum
|
PAXgene |
3
|
6 pieces; virtually no lymphoid tissue in strips of autolyzed mucosa
|
Unacceptable
|
 |
GTEX-16YQH
|
21-40
|
Male
|
GTEX-16YQH-2726 |
Ileum
|
PAXgene |
3
|
4 pieces, mucosa with advanced autolysis; ~10% retained lymphoid aggregates, delineated
|
Acceptable
|
 |
GTEX-16Z82
|
61-70
|
Male
|
GTEX-16Z82-2326 |
Ileum
|
PAXgene |
2
|
4 pieces; 3 small lymphoid foci [labeled] in totally autolyzed mucosa; LCM
|
Unacceptable
|
 |
GTEX-178AV
|
41-50
|
Male
|
GTEX-178AV-1226 |
Ileum
|
PAXgene |
1
|
6 pieces, well-fixed target lymphoid aggregates are ~!15% total tissue
|
Acceptable
|
 |
GTEX-17EUY
|
21-40
|
Male
|
GTEX-17EUY-1626 |
Ileum
|
PAXgene |
2
|
6 pieces; three include muscularis (not target), partially autolyzed mucosa/submucosa with substantial lymphoid component
|
Unacceptable
|
 |
GTEX-17EVP
|
41-50
|
Male
|
GTEX-17EVP-2826 |
Ileum
|
PAXgene |
3
|
4 pieces; autolyzed mucosa and target lymphoid aggregates
|
Unacceptable
|
 |
GTEX-17EVQ
|
61-70
|
Male
|
GTEX-17EVQ-2326 |
Ileum
|
PAXgene |
3
|
4 piecesm mucosa totally autolyzed; residual target lymphoid elements are ~20% total tissue
|
Acceptable
|
 |
GTEX-17F96
|
61-70
|
Male
|
GTEX-17F96-2226 |
Ileum
|
PAXgene |
2
|
4 pieces; 2 (larger) pieces have much lymphoid tissue, moderately autolyzed; 2 smaller pieces are without significant lymphoid tissue
|
Acceptable
|
 |
GTEX-17F97
|
51-60
|
Male
|
GTEX-17F97-2126 |
Ileum
|
PAXgene |
3
|
4 pieces; too little lymphoid tissue
|
Unacceptable
|
 |
GTEX-17F98
|
41-50
|
Female
|
GTEX-17F98-1426 |
Ileum
|
PAXgene |
2
|
6 pieces; 6 lymphoid nodules in 4 pieces [circled for LCM]; all have muscularis [not target]
|
Unacceptable
|
 |
GTEX-17F9E
|
51-60
|
Male
|
GTEX-17F9E-1526 |
Ileum
|
PAXgene |
1
|
6 pieces, well preserved, no target lympohid aggregates, not worth GTEX analysis. Contaminant pancreatic tisue present, ensquared
|
Unacceptable
|
 |
GTEX-17F9Y
|
61-70
|
Female
|
GTEX-17F9Y-2926 |
Ileum
|
PAXgene |
3
|
4 pieces markedly autolyzed, correct targeet; insufficient target lymphoid elements
|
Unacceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-1426 |
Ileum
|
PAXgene |
1
|
6 pieces, mucosa/muscularis, less than 5% lymphoid aggregates
|
Unacceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-0626 |
Ileum
|
PAXgene |
3
|
4 pieces; good lymphoid component, but too autolyzed
|
Unacceptable
|
 |
GTEX-17HGU
|
51-60
|
Male
|
GTEX-17HGU-2526 |
Ileum
|
PAXgene |
3
|
4 fragmented pieces; severe autolysis and too little intact lymphoid tissue
|
Unacceptable
|
 |
GTEX-17HHE
|
41-50
|
Male
|
GTEX-17HHE-1726 |
Ileum
|
PAXgene |
1
|
6 pieces, target lymphoid aggregates are ~30-40% of tissue, rep delineated.
|
Acceptable
|
 |
GTEX-17HHY
|
51-60
|
Male
|
GTEX-17HHY-2626 |
Ileum
|
PAXgene |
3
|
4 pieces: lymphoid and mucosal tissue severely autolyzed
|
Unacceptable
|
 |
GTEX-17HII
|
51-60
|
Male
|
GTEX-17HII-2826 |
Ileum
|
PAXgene |
2
|
4 pieces,glandular elements autolyzed; target lymphoid aggregates are ~20-30% of tissue; rep delineated
|
Acceptable
|
 |
GTEX-17JCI
|
61-70
|
Female
|
GTEX-17JCI-2726 |
Ileum
|
PAXgene |
3
|
4 pieces; too few lymphoid cells in autolyzed mucosa; 2 nodules circled for possible LCM
|
Unacceptable
|
 |
GTEX-17KNJ
|
51-60
|
Male
|
GTEX-17KNJ-1626 |
Ileum
|
PAXgene |
2
|
6 pieces, few lymphoid glandular aggregates, delineated
|
Acceptable
|
 |
GTEX-17MF6
|
41-50
|
Male
|
GTEX-17MF6-2526 |
Ileum
|
PAXgene |
3
|
4 pieces; autolyzed mucosa and too dispersed lymphoid aggregates to warrant further analysis; LCM
|
Unacceptable
|
 |