GTEX-QEG5
|
21-40
|
Male
|
GTEX-QEG5-2126 |
Stomach
|
PAXgene |
3
|
6 pieces up to 9.6x3.7 mm; severe mucosal hyperemia and superficial hemorrhages
|
Acceptable
|
|
GTEX-QEG5
|
21-40
|
Male
|
GTEX-QEG5-2226 |
Colon, transverse
|
PAXgene |
3
|
6 pieces up to 12x3.5 mm; mucosa very autolyzed, muscle slightly autolyzed(1); lymphoid cells preserved; submucosa very edematous
|
Acceptable
|
|
GTEX-QEG5
|
21-40
|
Male
|
GTEX-QEG5-2326 |
Urinary bladder
|
PAXgene |
3
|
6 pieces up to 8.6x5; mucosa on all, but sloughed (3); muscle preserved (1)
|
Acceptable
|
|
GTEX-QEG5
|
21-40
|
Male
|
GTEX-QEG5-2426 |
Prostate
|
PAXgene |
3
|
2 pieces 9x8 & 8x7 mm; glands autolyzed (3), stroma preserved (1)
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-0126 |
Spleen
|
PAXgene |
1
|
2 pieces ~10x8mm; slight congestion
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-0226 |
Pancreas
|
PAXgene |
1
|
2 pieces, ~9x7 & 8x8 mm; focal atrophic lobule; <10% adipose; islets ~150um appear normal
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-0326 |
Coronary artery
|
PAXgene |
1
|
2 pieces, ~2.5 mm arteries with focal eccentric plaques; ~20% peripheral adipose tissue
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-0426 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 11x3 mm; no plaques; 2 pieces have about 40% periaortic adipose tissue
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-0526 |
Heart
|
PAXgene |
1
|
2 pieces, 11x7 & 9x8.7; few contraction bands
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-0626 |
Lung
|
PAXgene |
0
|
2 pieces ~8x6 mm; good morphology, no inflammation
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-0726 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces up to 8.5x4.9 mm; good muscle layer
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-0826 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces up to 5.9x3.8 mm; good squamous mucosa
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-0926 |
Urinary bladder
|
PAXgene |
3
|
6 thin pieces up to 5.7x1.2 mm; epithelium largely sloughed; thin aliquot with no muscle; cassette ridge markings suggest tight fit
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-1126 |
Colon, transverse
|
PAXgene |
3
|
6 pieces up to 8.7x2.6 mm; mucosa almost completely autolyzed; muscle moderately autolyzed
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-1226 |
Stomach
|
PAXgene |
2
|
6 pieces up to ~7x5 mm; mucosa largely autolyzed; focal mucosal surface hemorrhages
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-1326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces of adipose tissue without mammary elements; large central defects in 15x12 & 12x12 mm aliquots; probably poorly fixed
|
Unacceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-1426 |
Skin, leg
|
PAXgene |
1
|
6 pieces, up to ~5 x 3.8 mm; epidermis ~90um
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-1526 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 13x9 & 13x8 mm; large central defects, probably poorly fixed in these large aliquots
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-1626 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, 10x8.6 & 9.4x7.9 mm
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-1726 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 2.5x4 & 2.5x3 mm, minimal peripheral adipose
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-1826 |
Artery - tibial
|
PAXgene |
1
|
2 pieces, 1.5 – 2 mm diameter; no plaques; no extraneous adipose tissue
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-2026 |
Liver
|
PAXgene |
1
|
2 pieces ~9x8mm; central pallor; no fibrosis or inflammation
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-0126 |
Spleen
|
PAXgene |
1
|
2 pieces ~8x7 mm; not congested
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-0226 |
Adrenal glands
|
PAXgene |
1
|
2 pieces 9.8x2.6 & 9x1.7 mm; mostly cortex; minimal adipose
|
Acceptable
|
|
GTEX-QLQW
|
21-40
|
Male
|
GTEX-QLQW-0326 |
Pancreas
|
PAXgene |
1
|
2 pieces 11.9x8 & 9x9 mm; well formed islets ~230um; focal interstitial fibrosis; ~10% interstitial fat
|
Acceptable
|
|