NIH, National Cancer Institute, Division of Cancer Treatment and Diagnosis (DCTD) NIH - National Institutes of Health National Cancer Institute DCTD - Division of Cancer Treatment and Diagnosis

GTEx Histological Images

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Case ID Age Gender Specimen ID Tissue Type Fixative Autolysis Pathology Review Comments Acceptability Action
GTEX-QEG5 21-40 Male GTEX-QEG5-2126 Stomach PAXgene 3 6 pieces up to 9.6x3.7 mm; severe mucosal hyperemia and superficial hemorrhages Acceptable View Image
GTEX-QEG5 21-40 Male GTEX-QEG5-2226 Colon, transverse PAXgene 3 6 pieces up to 12x3.5 mm; mucosa very autolyzed, muscle slightly autolyzed(1); lymphoid cells preserved; submucosa very edematous Acceptable View Image
GTEX-QEG5 21-40 Male GTEX-QEG5-2326 Urinary bladder PAXgene 3 6 pieces up to 8.6x5; mucosa on all, but sloughed (3); muscle preserved (1) Acceptable View Image
GTEX-QEG5 21-40 Male GTEX-QEG5-2426 Prostate PAXgene 3 2 pieces 9x8 & 8x7 mm; glands autolyzed (3), stroma preserved (1) Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-0126 Spleen PAXgene 1 2 pieces ~10x8mm; slight congestion Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-0226 Pancreas PAXgene 1 2 pieces, ~9x7 & 8x8 mm; focal atrophic lobule; <10% adipose; islets ~150um appear normal Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-0326 Coronary artery PAXgene 1 2 pieces, ~2.5 mm arteries with focal eccentric plaques; ~20% peripheral adipose tissue Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-0426 Aorta PAXgene 1 6 pieces, up to 11x3 mm; no plaques; 2 pieces have about 40% periaortic adipose tissue Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-0526 Heart PAXgene 1 2 pieces, 11x7 & 9x8.7; few contraction bands Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-0626 Lung PAXgene 0 2 pieces ~8x6 mm; good morphology, no inflammation Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-0726 Esophagus - muscularis PAXgene 1 6 pieces up to 8.5x4.9 mm; good muscle layer Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-0826 Esophagus - mucosa PAXgene 1 6 pieces up to 5.9x3.8 mm; good squamous mucosa Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-0926 Urinary bladder PAXgene 3 6 thin pieces up to 5.7x1.2 mm; epithelium largely sloughed; thin aliquot with no muscle; cassette ridge markings suggest tight fit Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-1126 Colon, transverse PAXgene 3 6 pieces up to 8.7x2.6 mm; mucosa almost completely autolyzed; muscle moderately autolyzed Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-1226 Stomach PAXgene 2 6 pieces up to ~7x5 mm; mucosa largely autolyzed; focal mucosal surface hemorrhages Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-1326 Mammary tissue (breast) PAXgene 1 2 pieces of adipose tissue without mammary elements; large central defects in 15x12 & 12x12 mm aliquots; probably poorly fixed Unacceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-1426 Skin, leg PAXgene 1 6 pieces, up to ~5 x 3.8 mm; epidermis ~90um Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-1526 Adipose tissue PAXgene 1 2 pieces, 13x9 & 13x8 mm; large central defects, probably poorly fixed in these large aliquots Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-1626 Muscle, skeletal PAXgene 1 2 pieces, 10x8.6 & 9.4x7.9 mm Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-1726 Nerve - tibial PAXgene 1 2 pieces, 2.5x4 & 2.5x3 mm, minimal peripheral adipose Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-1826 Artery - tibial PAXgene 1 2 pieces, 1.5 – 2 mm diameter; no plaques; no extraneous adipose tissue Acceptable View Image
GTEX-QESD 21-40 Male GTEX-QESD-2026 Liver PAXgene 1 2 pieces ~9x8mm; central pallor; no fibrosis or inflammation Acceptable View Image
GTEX-QLQW 21-40 Male GTEX-QLQW-0126 Spleen PAXgene 1 2 pieces ~8x7 mm; not congested Acceptable View Image
GTEX-QLQW 21-40 Male GTEX-QLQW-0226 Adrenal glands PAXgene 1 2 pieces 9.8x2.6 & 9x1.7 mm; mostly cortex; minimal adipose Acceptable View Image
GTEX-QLQW 21-40 Male GTEX-QLQW-0326 Pancreas PAXgene 1 2 pieces 11.9x8 & 9x9 mm; well formed islets ~230um; focal interstitial fibrosis; ~10% interstitial fat Acceptable View Image