GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0326 |
Lung
|
PAXgene |
1
|
2 aliquots, ~ 9x6mm. Mild congestion; prominent mucoid secretions in bronchus
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0426 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, ~ 7x4mm
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0526 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, ~6x2mm. Squamous mucosa is ~20% of thickness
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0626 |
Stomach
|
PAXgene |
0
|
6 pieces, ~ 10x4mm. Mucosa extremely well preserved, ~30% of thickness
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0726 |
Ovary
|
PAXgene |
0
|
2 aliquots, ~ 9x7mm. Rare residual oocytes, involuting corpus luteum
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0826 |
Fallopian tube
|
PAXgene |
0
|
2 aliquots, ~ 4.5mm d. Mucosa extremely well preserved
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0926 |
Urinary bladder
|
PAXgene |
1
|
6 pieces, all adipose tissue, unknown origin. Cannot be used for GTEx study
|
Unacceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1026 |
Uterus
|
PAXgene |
1
|
2 aliquots, ~ 9x7mm. All myometrium, no visible endometrial glands or stroma
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1126 |
Cervix - ectocervix
|
PAXgene |
1
|
4 aliquots, ~ 12x9mm. 3 show focal squamous mucosa, ~100 microns thick, encircled; one with single layer endocervical mucosa, 10 microns thick, en squared
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1226 |
Vagina
|
PAXgene |
1
|
6 pieces, ~ 5x4mm, squamous mucosa is ~ 2-3% of thickness, present at least focally in 5 of 6 aliquots
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1326 |
Cervix - endocervix
|
PAXgene |
1
|
4 aliquots, ~ 7x7mm. One shows endocervical surface mucosa with early squamous metaplasia encircled, and deeper endocervical glands en squared; other 3 with no glands, only stroma
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1426 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, ~7x3.5mm. Mucosa reasonably well preserved, ~8-10% of thickness
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1526 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 aliquots, ~8x5mm. Focal areas of fibrocystic (microcystic) change encircled; normal TDLUs en squared
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1626 |
Adipose tissue
|
PAXgene |
0
|
2 aliquots, ~9x8mm
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1726 |
Skin, leg
|
PAXgene |
0
|
6 pieces, ~ 7.5x2.5mm. Squamous epithelium is 2-3% of thickness
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1826 |
Muscle, skeletal
|
PAXgene |
0
|
2 aliquots, ~ 8x5mm. 2.5x1mm focus of fibrous tissue in one, encircled. Minimal interstitial fat
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1926 |
Nerve - tibial
|
PAXgene |
0
|
2 aliquots, ~ 4.5mm d. Good clean specimens
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-2026 |
Artery - tibial
|
PAXgene |
0
|
2 aliquots, ~2mm d. Good clean specimens
|
Acceptable
|
|
GTEX-S4UY
|
41-50
|
Female
|
GTEX-S4UY-0126 |
Skin, leg
|
PAXgene |
0
|
6pieces, 6.5x2.5mm, squamous epithelium is ~1-3% of thickness
|
Acceptable
|
|
GTEX-S4UY
|
41-50
|
Female
|
GTEX-S4UY-0226 |
Adipose tissue
|
PAXgene |
0
|
2 aliquots, 8x6mm
|
Acceptable
|
|
GTEX-S4UY
|
41-50
|
Female
|
GTEX-S4UY-0326 |
Nerve - tibial
|
PAXgene |
0
|
2 aliquots, ~4mm d.
|
Acceptable
|
|
GTEX-S4UY
|
41-50
|
Female
|
GTEX-S4UY-0426 |
Artery - tibial
|
PAXgene |
0
|
2 aliquots, ~1.5mm d.
|
Acceptable
|
|
GTEX-S4UY
|
41-50
|
Female
|
GTEX-S4UY-0526 |
Muscle, skeletal
|
PAXgene |
0
|
2 aliquots, ~7x6mm. Minimal (<5%) interstitial fat
|
Acceptable
|
|
GTEX-S4UY
|
41-50
|
Female
|
GTEX-S4UY-0626 |
Thyroid gland
|
PAXgene |
0
|
2 aliquots, ~7x6mm, diffuse lymphocytic/Hashimoto's thyroiditis with prominent regressive changes
|
Acceptable
|
|
GTEX-S4UY
|
41-50
|
Female
|
GTEX-S4UY-0726 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 aliquots, ~7x5mm. Post-menopausal TDLUs present, encricled
|
Acceptable
|
|