GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-0226 |
Adipose tissue
|
PAXgene |
1
|
2 aliquots, ~9x5mm
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-0326 |
Coronary artery
|
PAXgene |
1
|
2 aliquots, ~3.2mm. One is all fat, the other is ~90% fat with ~0.8mm vessel on edge of one aliquot
|
Unacceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-0426 |
Nerve - tibial
|
PAXgene |
0
|
2 aliquots, ~4mm d. Rim of fat from ~0.3-0.5mm thickness, discontinuous, around both
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-0526 |
Artery - tibial
|
PAXgene |
0
|
2 aliquots, ~1.5mm in d. Good, clean specimens, no adherent fat
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-0626 |
Heart
|
PAXgene |
1
|
2 aliquots, ~9x6mm, mild interstitial fibrosis
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-0726 |
Muscle, skeletal
|
PAXgene |
0
|
2 aliquots, ~10x5mm, essentially no interstitial fat
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-0826 |
Thyroid gland
|
PAXgene |
1
|
2 aliquots, ~7x7mm
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-0926 |
Aorta
|
PAXgene |
1
|
6 pieces, ~7.5x1.2 mm
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-1026 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 aliquots, ~7x7mm. Single minute ductal unit noted, ~100 microns in d.
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-1126 |
Lung
|
PAXgene |
1
|
2 aliquots, ~9x6mm. Fairly well preserved, minimal congestion
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-1226 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, ~5.5x1.5mm. Squamous mucosa is ~ 10-15% of thickness
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-1326 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, ~5.5x1.5mm
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-1426 |
Liver
|
PAXgene |
1
|
2 aliquots, ~7x6mm. Fairly well preserved, minimal fat
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-1526 |
Pancreas
|
PAXgene |
2
|
2 aliquots, ~6.5x6mm. Badly autolyzed, saponfication. LCACC ALERT: ~30% of one aliquot is all fat (circled in pink)
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-1626 |
Spleen
|
PAXgene |
2
|
2 aliquots, ~6.5x6mm. Marked congestion
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-1726 |
Adrenal glands
|
PAXgene |
1
|
2 aliquots, ~16x3mm. All cortex
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-1826 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces, 7x3mm.
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-1926 |
Kidney - medulla
|
PAXgene |
2
|
2 aliquots, ~9x6mm. LDACC alert: All of one and ~60% of the other are pure medulla (encircled) ~40% of one is cortex. Tubules badly autolyzed.
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-2026 |
Prostate
|
PAXgene |
1
|
2 aliquots, ~9x7mm. Diffuse glandular hyperplasia. Mucosa unusually well-preserved
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-2126 |
Urinary bladder
|
PAXgene |
2
|
6 pieces ~7x2mm. Urothelium largely sloughed, where evaluable is 1-2% of thickness
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-2226 |
Stomach
|
PAXgene |
3
|
6 pieces, ~6x2.5mm. Mucosa badly autolyzed, 30-50% of thickness
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-2326 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, ~7.5x1.5mm. Mucosa badly autolyzed, 10-20% of thickness
|
Acceptable
|
|
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-2426 |
Testis
|
PAXgene |
1
|
2 aliquots, ~8x5mm. Spermatogenesis visible but appears slightly reduced
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0126 |
Adrenal glands
|
PAXgene |
1
|
2 aliquots, ~ 10x7 & 2x1mm, the smaller attached to a large nubbin of fat, ~8x5mm--LDACC ALERT
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0226 |
Thyroid gland
|
PAXgene |
1
|
2 aliquots, ~ 9xx8mm. Microglandular adenomatoid nodule in squares; focal skeletal muscle encircled. LDACC ALERT
|
Acceptable
|
|