GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1426 |
Vagina
|
PAXgene |
2
|
6 ~8x2.5mm pieces. Squamous mucosa is ~ 5-7% of thickness
|
Acceptable
|
|
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1526 |
Cervix - ectocervix
|
PAXgene |
1
|
2 aliquots ~ 12.5x3mm. Squamous mucosa (keratinizing in foci) is 3-5% of thickness; good specimens
|
Acceptable
|
|
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1626 |
Uterus
|
PAXgene |
1
|
2 aliquots ~10x3mm. Trace minute glands, adenomyosis.
|
Acceptable
|
|
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1726 |
Cervix - endocervix
|
PAXgene |
1
|
2 ~10.5x2.2mm aliquots, each ~40 glandular tissue. One aliquot is more upper endo-cervix/lower uterine segment
|
Acceptable
|
|
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1826 |
Adipose tissue
|
PAXgene |
1
|
2 ~8.5x6mm aliquots. Areas of under/poor fixation centrally
|
Acceptable
|
|
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1926 |
Skin, leg
|
PAXgene |
0
|
6 pieces, ~8x3mm. Squamous epithelium is ~1.5-2% of thickness
|
Acceptable
|
|
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-2026 |
Muscle, skeletal
|
PAXgene |
1
|
2 ~9x7mm aliquots, one fragmented. Poorly fixed.
|
Acceptable
|
|
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-2126 |
Nerve - tibial
|
PAXgene |
1
|
4 ~4.5x3mm pieces of tendon. Incorrect tissue, not in GTEx list
|
Unacceptable
|
|
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-2226 |
Artery - tibial
|
PAXgene |
1
|
2 ~4x2mm aliquots. ~50% of aliquots are peri-arterial connective tissue, fat, small vessels
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-0126 |
Skin, leg
|
PAXgene |
1
|
6 pieces, up to 8x2.5 mm
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-0226 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 9x7 & 11x 6mm
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-0326 |
Artery - tibial
|
PAXgene |
1
|
2 calcified arteries, ~2.5 mm diameter; 1 with adjacent nerve; both with adjacent vein
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-0426 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces 3.8x3.5 & 5x1.8 mm
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-0526 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces 11x5 & 8.6x5 mm; 1 with ~10% adipose and adjacent blood vessels and nerve
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-0626 |
Mammary tissue (breast)
|
PAXgene |
2
|
2 pieces 7x7 & 7x6 mm; 1 piece has 90% adjacent adipose tissue; other has ducts and lobules with ~20% admixed adipose tissue
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-0726 |
Thyroid gland
|
PAXgene |
2
|
2 pieces 7x6.7 & 8x7 mm
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-0826 |
Coronary artery
|
PAXgene |
1
|
2 arteries ~3mm in diameter, one with moderate atherosclerosis; both have 40-60% adjacent adipose tissue
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-0926 |
Heart
|
PAXgene |
1
|
2 pieces 9x8 & 8x8 mm; moderate interstitial fibrosis
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-1026 |
Lung
|
PAXgene |
2
|
2 pieces 11x10 & 10 x 8 mm; no infiltrates
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-1126 |
Aorta
|
PAXgene |
1
|
6 pieces up to 8.8x1.5 mm; moderately atherosclerotic and calcified
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-1226 |
Liver
|
PAXgene |
2
|
2 pieces 9x8 & 8x7 mm; centrally congested and moderately autolyzed centrally
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-1326 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces up to 6.5x1.4 mm; well preserved squamous mucosa and submucosal glands
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-1426 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces up to 9x2 mm
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-1526 |
Spleen
|
PAXgene |
3
|
2 pieces, both 6.8x6.5 mm; congested and autolyzed
|
Acceptable
|
|
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-1626 |
Pancreas
|
PAXgene |
3
|
2 pieces, 7x5 & 6x5 mm; extensive parenchymal autolysis focally severe
|
Acceptable
|
|