GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1126 |
Liver
|
PAXgene |
1
|
2 ~9x7.5mm aliquots, patchy mixed micro-and macro-vesicular steatosis, ~25%
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1226 |
Esophagus - muscularis
|
PAXgene |
1
|
6 ~7x2.5mm pieces
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1326 |
Esophagus - mucosa
|
PAXgene |
2
|
6 ~7x1mm pieces. Squamous mucosa focally sloughing, ~ 40-50% of thickness
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1426 |
Spleen
|
PAXgene |
3
|
2 8x7.5mm aliquots. Appears under-fixed
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1526 |
Pancreas
|
PAXgene |
2
|
2 ~10x7mm aliquots, relatively clean, mild peripancreatic saponification
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1626 |
Adrenal glands
|
PAXgene |
3
|
2 aliquots ~ 20x7mm (nearly full sections), all cortex but generally badly autolyzed
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1726 |
Kidney - cortex
|
PAXgene |
3
|
6 ~6.3x3mm pieces. Tubules badly autolyzed
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1826 |
Kidney - medulla
|
PAXgene |
3
|
2 ~6.5x6mm pieces, both with numerous glomeruli (50% or more of both aliquots)
|
Unacceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1926 |
Stomach
|
PAXgene |
3
|
2 aliquots, ~8.5x2.5mm. Mucosa better preserved than usual for an autopsy, ~50% of thickness
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2026 |
Colon, transverse
|
PAXgene |
3
|
6 pieces ~ 8x1.5mm. Mucosa badly autolyzed, 10-25% of thickness
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2126 |
Urinary bladder
|
PAXgene |
2
|
6 ~8 x 4mm pieces, urothelium 95% sloughed. Wall is ~50% fat/50%detrussor muscle
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2226 |
Vagina
|
PAXgene |
1
|
6 ~9x4.5mm pieces. Squamous mucosa visible on 3/6, ~5% of thickness
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2326 |
Cervix - ectocervix
|
PAXgene |
3
|
4 ~6.5x4mm aliquots. Autolyzed endocervical glands with tunnel clusters/Nabothian cysts present
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2426 |
Cervix - endocervix
|
PAXgene |
3
|
4 ~5x4 mm aliquots. No visible viable endo cervical mucosa
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2526 |
Fallopian tube
|
PAXgene |
2
|
2 ~6x4mm aliquots. Mucosa ~ 20% total; badly autolyzed
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2626 |
Ovary
|
PAXgene |
1
|
2 ~7x6.5mm aliquots, late stage corpus luteum. No ova noted.
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2726 |
Uterus
|
PAXgene |
1
|
2 ~6x3.5mm aliquots, all myometrium; no visible glandular components
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2826 |
Brain - cerebellum
|
PAXgene |
2
|
4 ~6x4 fragmented aliquots
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2926 |
Brain - cortex
|
PAXgene |
2
|
4 fragmented aliquots, ~ 6x4mm
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-3026 |
Pituitary gland
|
PAXgene |
2
|
Fragmented ~9x7mm aliquot
|
Acceptable
|
|
GTEX-Q2AI
|
41-50
|
Male
|
GTEX-Q2AI-0126 |
Spleen
|
PAXgene |
1
|
2 pieces ~11x8 mm; low lymphoid content
|
Acceptable
|
|
GTEX-Q2AI
|
41-50
|
Male
|
GTEX-Q2AI-0226 |
Adrenal glands
|
PAXgene |
1
|
2 pieces ~9x1 mm; good cortical morphology
|
Acceptable
|
|
GTEX-Q2AI
|
41-50
|
Male
|
GTEX-Q2AI-0326 |
Thyroid gland
|
PAXgene |
1
|
2 pieces 11x7 & 10x8mm; 1.3mm circular defect corresponds to cassette’s center-point
|
Acceptable
|
|
GTEX-Q2AI
|
41-50
|
Male
|
GTEX-Q2AI-0426 |
Pancreas
|
PAXgene |
1
|
2 pieces 12x8 & 7x7 mm; ~20% fat in each (included amongst the parenchyma, not outside)
|
Acceptable
|
|
GTEX-Q2AI
|
41-50
|
Male
|
GTEX-Q2AI-0526 |
Lung
|
PAXgene |
1
|
2 pieces ~9x7 mm; extensive bronchopneumonia
|
Acceptable
|
|