GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-1126 |
Esophagus - mucosa
|
PAXgene |
1
|
6 ~6.5x3mm pieces. Squamous mucosa is 5-10% of thickness
|
Acceptable
|
|
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-1226 |
Stomach
|
PAXgene |
1
|
6 ~7x3.5mm pieces. Mucosa overall well-preserved, focally with superficial moderate autolysis. Chronic gastritis (patchy). Mucosa ranges from ~30-60% of thickness.
|
Acceptable
|
|
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-1326 |
Colon, transverse
|
PAXgene |
2
|
6 ~ 8x3.75mm pieces; mucosa is ~ 5-10% of thickness
|
Acceptable
|
|
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-1426 |
Urinary bladder
|
PAXgene |
1
|
6 pieces, urothelium sparse and ~ 1% of thickness where visible (focal in 3of 6 aliquots, ~7x3.5mm)
|
Acceptable
|
|
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-1526 |
Uterus
|
PAXgene |
1
|
2 ~10x4mm aliquots. 99% myometrium; rare focal glands, probably lower uterine segment/upper endocervix
|
Acceptable
|
|
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-1626 |
Fallopian tube
|
PAXgene |
1
|
2 ~ 3mm d aliquots; good clean specimens
|
Acceptable
|
|
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-1726 |
Ovary
|
PAXgene |
0
|
2 ~9x5mm aliquots. No visible ova, involuted corpus luteum noted
|
Acceptable
|
|
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-1826 |
Cervix - ectocervix
|
PAXgene |
1
|
4 ~11x4.5mm aliquots. Mainly squamous, focal glandular mucosa (transition zone), ~5-8% of thickness
|
Acceptable
|
|
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-1926 |
Cervix - endocervix
|
PAXgene |
1
|
4 ~10x3.4mm aliquots. Mixed endo & ectocervical mucosa (trace amounts)
|
Acceptable
|
|
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-2026 |
Vagina
|
PAXgene |
0
|
6 ~6x2.5mm pieces; squamous mucosa is ~10 thickness/ r/o dysplasia on glass
|
Acceptable
|
|
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-2126 |
Skin, leg
|
PAXgene |
1
|
6 ~6x2.5mm pieces. Squamous epithelium is ~1.5-2% of thickness (~40-50 microns)
|
Acceptable
|
|
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-2226 |
Adipose tissue
|
PAXgene |
1
|
2 ~11x9mm aliquots. Large areas of central under-fixation with holes/tears
|
Acceptable
|
|
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-2326 |
Muscle, skeletal
|
PAXgene |
0
|
2 ~10x6mm aliquots, ~ 20% interstitial fat. Focal areas of scarring
|
Acceptable
|
|
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-2426 |
Artery - tibial
|
PAXgene |
0
|
2 ~ 1.5d aliquots, good clean specimens
|
Acceptable
|
|
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-2526 |
Nerve - tibial
|
PAXgene |
0
|
2 ~ 5.5x3.5mm aliquots, clean specimens
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0126 |
Skin, leg
|
PAXgene |
1
|
6 ~8x2.5mm pieces. Squamous epithelium is ~1--2% of thickness
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0226 |
Adipose tissue
|
PAXgene |
1
|
2 ~9x6mm aliquots, fragmented
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 ~9x7mm aliquots, ~ 70% ductal/lobular units, good specimen
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0426 |
Muscle, skeletal
|
PAXgene |
1
|
2 ~7x6.5mm aliquots, ~20% interspersed fat
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0526 |
Artery - tibial
|
PAXgene |
1
|
2 ~2mm d aliquots, clean specimens
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0626 |
Nerve - tibial
|
PAXgene |
2
|
2 ~6x4.5mm aliquots, both with ~6mm rim of fat.
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0726 |
Heart
|
PAXgene |
1
|
2 ~7.5x6.5 mm aliquots, areas of poor/under-fixation
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0826 |
Thyroid gland
|
PAXgene |
2
|
2 ~8x6.5mm aliquots
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0926 |
Aorta
|
PAXgene |
1
|
6 ~9x1.5mm pieces, minimal atherosis
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1026 |
Lung
|
PAXgene |
2
|
2 ~8x6.5mm aliquots, areas of interstitial fibrosis/inflammation
|
Acceptable
|
|