|
GTEX-U3ZN
|
21-40
|
Female
|
GTEX-U3ZN-0626 |
Lung
|
PAXgene |
1
|
2 pieces 10x8 & 9x8 mm; panacinar emphysema; 2x1.6 mm pleural adipose focus (pleural tissue should be avoided)
|
Acceptable
|
 |
|
GTEX-U3ZN
|
21-40
|
Female
|
GTEX-U3ZN-1926 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 pieces 13x9 & 12x11 mm; latter with ~80% adipose (with large central defect); ducts and lobular units present
|
Acceptable
|
 |
|
GTEX-U3ZN
|
21-40
|
Female
|
GTEX-U3ZN-2626 |
Adipose tissue
|
PAXgene |
1
|
2 pieces 15x5 & 14x4mm; minimal artifacts
|
Acceptable
|
 |
|
GTEX-U412
|
61-70
|
Male
|
GTEX-U412-0526 |
Adipose tissue
|
PAXgene |
1
|
2 pieces ~8x7mm
|
Acceptable
|
 |
|
GTEX-U412
|
61-70
|
Male
|
GTEX-U412-0826 |
Lung
|
PAXgene |
3
|
2 pieces severe probable congestion but severly autolyzed tissue hampers interpretation, ~7x5mm
|
Acceptable
|
 |
|
GTEX-U412
|
61-70
|
Male
|
GTEX-U412-1226 |
Esophagus - mucosa
|
PAXgene |
3
|
6 pieces, minimal evident muscle; edematous fat/fibrous tissue, badly autolyzed, uncertain provenance
|
Unacceptable
|
 |
|
GTEX-U412
|
61-70
|
Male
|
GTEX-U412-1826 |
Mammary tissue (breast)
|
PAXgene |
2
|
2 pieces, one iwth trace focal ductal epithelium, encircled
|
Acceptable
|
 |
|
GTEX-U4B1
|
41-50
|
Male
|
GTEX-U4B1-1326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 10.4x11.5 & 14.5x15 mm; no mammary tissue, only fibroadipose tissue; large central defect in larger over-sized piece
|
Acceptable
|
 |
|
GTEX-U4B1
|
41-50
|
Male
|
GTEX-U4B1-1726 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 9.5x16.9 & 15.2x9.7 mm; 1 piece has a ~40% fibrous component
|
Acceptable
|
 |
|
GTEX-U8T8
|
51-60
|
Male
|
GTEX-U8T8-0226 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, 6x7 & 6x7.5mm ;focal acute hemorrhages, possibly due to trauma
|
Acceptable
|
 |
|
GTEX-U8T8
|
51-60
|
Male
|
GTEX-U8T8-0526 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 6x8 & 7x8mm; no mammary ducts, all adipose
|
Acceptable
|
 |
|
GTEX-U8T8
|
51-60
|
Male
|
GTEX-U8T8-1026 |
Pancreas
|
PAXgene |
3
|
2 pieces, 8.5x7 & 9x7mm; tissue barely recognizable; 10-20% adipose
|
Acceptable
|
 |
|
GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-0426 |
Adipose tissue
|
PAXgene |
0
|
2 pieces ~7x6mm
|
Acceptable
|
 |
|
GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-0826 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces ~7x4mm. Fibroadipose tissue only, no ductal elements seen
|
Acceptable
|
 |
|
GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-1926 |
Omentum
|
PAXgene |
1
|
2 pieces ~8x5mm, well preserved adipose tissue
|
Acceptable
|
 |
|
GTEX-UJHI
|
51-60
|
Female
|
GTEX-UJHI-1426 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 pieces, 9x6 & 8x7mm; numerous terminal ducts and lobules; stroma is more fibrous than fatty
|
Acceptable
|
 |
|
GTEX-UJHI
|
51-60
|
Female
|
GTEX-UJHI-1626 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 8x6 & 12x6mm; ~20% fibrous stroma separates adipose into lobules
|
Acceptable
|
 |
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-0826 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 pieces, ~13x7mm, all fibroadipose, no ductal elements noted
|
Acceptable
|
 |
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-1726 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, ~10x9mm
|
Acceptable
|
 |
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-0626 |
Esophagus - muscularis
|
PAXgene |
0
|
6 pieces, up to 8x4mm; good muscle and neural tissue
|
Acceptable
|
 |
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1226 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, 13x10 & 10x8mm; central portion is hollow, presumably not fixed; outer rim of tissue is from 0.1 to 3 mm thick; the two pieces contain about 40% muscle and 60% adipose interspersed; because of the Trisomy 17 diagnosis I recommend keeping this although for GTEx purposes it is not acceptable
|
Acceptable
|
 |
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1326 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 11x9.5 & 10x7mm; larger piece has central hollow defect >50% of aliquot
|
Acceptable
|
 |
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1926 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 9x5 & 7x7mm; ducts and immature lobules
|
Acceptable
|
 |
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-0426 |
Adipose tissue
|
PAXgene |
1
|
2 pieces ~9x6mm
|
Acceptable
|
 |
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-2326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces ~8x6mm. No ductal elements noted
|
Acceptable
|
 |