GTEX-ZAK1
|
51-60
|
Female
|
GTEX-ZAK1-2226 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces, all have glomeruli
|
Acceptable
|
 |
GTEX-ZAK1
|
51-60
|
Female
|
GTEX-ZAK1-2326 |
Pancreas
|
PAXgene |
2
|
2 pieces, moderate-marked saponification/autolysis; islets still well visualized; rep ones delineated
|
Acceptable
|
 |
GTEX-ZAK1
|
51-60
|
Female
|
GTEX-ZAK1-2426 |
Vagina
|
PAXgene |
2
|
6 pieces; squamous mucosa beginning to slough, ~0.1mm thick, 2-3% thickness
|
Acceptable
|
 |
GTEX-ZAK1
|
51-60
|
Female
|
GTEX-ZAK1-2526 |
Uterus
|
PAXgene |
1
|
2 pieces, myometrium, no viable endometrium noted
|
Acceptable
|
 |
GTEX-ZAK1
|
51-60
|
Female
|
GTEX-ZAK1-2626 |
Ileum
|
PAXgene |
3
|
4 pieces, mucosa totally autolyzed; ~5-10% specimen is lymphoid aggregates, rep foci delineated
|
Acceptable
|
 |
GTEX-ZAK1
|
51-60
|
Female
|
GTEX-ZAK1-2726 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; mucosa ~10-40% thickness but totally autolyzed/sloughing
|
Acceptable
|
 |
GTEX-ZAK1
|
51-60
|
Female
|
GTEX-ZAK1-2826 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, ~10% adherent serosa, ~90% muscularis, unusually poorly preserved
|
Acceptable
|
 |
GTEX-ZAK1
|
51-60
|
Female
|
GTEX-ZAK1-2926 |
Brain - cerebellum
|
PAXgene |
1
|
4 pieces, Purkinje cells show minimal ischemic damage
|
Acceptable
|
 |
GTEX-ZAK1
|
51-60
|
Female
|
GTEX-ZAK1-3026 |
Brain - cortex
|
PAXgene |
1
|
4 pieces
|
Acceptable
|
 |
GTEX-ZAK1
|
51-60
|
Female
|
GTEX-ZAK1-3126 |
Pituitary gland
|
PAXgene |
1
|
1 piece, ~50% neurohypophysis, delineated; rest adenohypophysis
|
Acceptable
|
 |
GTEX-ZAKK
|
61-70
|
Male
|
GTEX-ZAKK-0126 |
Skin, leg
|
PAXgene |
0
|
6 pieces. All 6 are poorly trimmed with up to 2.5 mm of subcutaneous fat (half the total thickness of the specimen).
|
Acceptable
|
 |
GTEX-ZAKK
|
61-70
|
Male
|
GTEX-ZAKK-0226 |
Adipose tissue
|
PAXgene |
0
|
2 pieces. Both pieces contain large amounts of dense fibrous tissue, probably fascia: 90% of 1 and 60% of other.
|
Unacceptable
|
 |
GTEX-ZAKK
|
61-70
|
Male
|
GTEX-ZAKK-0326 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces. Moderate atrophy with fibrosis and small vessel disease
|
Acceptable
|
 |
GTEX-ZAKK
|
61-70
|
Male
|
GTEX-ZAKK-0426 |
Artery - tibial
|
PAXgene |
0
|
2 pieces. Moderate to severe atherosclerosis with up to 90% occlusion.
|
Acceptable
|
 |
GTEX-ZAKK
|
61-70
|
Male
|
GTEX-ZAKK-0526 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces. Prominent (diabetic) small artery disease (thickening). Stromal fibrosis. Nerve fibers appear atrophic.
|
Acceptable
|
 |
GTEX-ZC5H
|
41-50
|
Female
|
GTEX-ZC5H-0126 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, minimal fibrous tissue
|
Acceptable
|
 |
GTEX-ZC5H
|
41-50
|
Female
|
GTEX-ZC5H-0226 |
Skin, leg
|
PAXgene |
0
|
6 pieces, trace fat (~0.5mm) on a few sections. Squamous epithelium is ~50-60 microns thick
|
Acceptable
|
 |
GTEX-ZC5H
|
41-50
|
Female
|
GTEX-ZC5H-0326 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, <1% interstitial fat; trace adherent fat, delineated
|
Acceptable
|
 |
GTEX-ZC5H
|
41-50
|
Female
|
GTEX-ZC5H-0426 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, circumferential adherent fibrous tissue ~0.5mm
|
Acceptable
|
 |
GTEX-ZC5H
|
41-50
|
Female
|
GTEX-ZC5H-0526 |
Nerve - tibial
|
PAXgene |
0
|
3 pieces, two with trace adherent fatty nubbins ~0.5-1.0mm, delineated
|
Acceptable
|
 |
GTEX-ZC5H
|
41-50
|
Female
|
GTEX-ZC5H-0626 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, well preserved, minimal inflammation
|
Acceptable
|
 |
GTEX-ZC5H
|
41-50
|
Female
|
GTEX-ZC5H-0726 |
Liver
|
PAXgene |
1
|
2 pieces, well preserved, moderate congestion, minimal steatosis
|
Acceptable
|
 |
GTEX-ZC5H
|
41-50
|
Female
|
GTEX-ZC5H-0826 |
Pancreas
|
PAXgene |
2
|
2 pieces, moderately autolyzed, Islets still discernable; rep. ones delineated
|
Acceptable
|
 |
GTEX-ZC5H
|
41-50
|
Female
|
GTEX-ZC5H-0926 |
Lung
|
PAXgene |
2
|
2 pieces moderate congestion, chronic & focal acute pneumonitis, a few giant cells noted in bronchial lumina, ? aspiration features
|
Acceptable
|
 |
GTEX-ZC5H
|
41-50
|
Female
|
GTEX-ZC5H-1026 |
Aorta
|
PAXgene |
1
|
6 pieces ~0.5mm adherent serosa
|
Acceptable
|
 |