GTEX-YB5E
|
41-50
|
Male
|
GTEX-YB5E-1126 |
Stomach
|
PAXgene |
1
|
1 piece, 12x2mm; mucosa is well preserved, ~90% thickness, gastric gland dilation
|
Acceptable
|
 |
GTEX-YB5E
|
41-50
|
Male
|
GTEX-YB5E-1226 |
Omentum
|
PAXgene |
1
|
2 pieces, 15x10 & 12x9mm; prominent muscular arteries/ lylmph node noted, all delineated
|
Acceptable
|
 |
GTEX-YB5E
|
41-50
|
Male
|
GTEX-YB5E-1326 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces, up to 12x4.5mm; squamous epithelium up to ~1.5% thickness, minimal fat
|
Acceptable
|
 |
GTEX-YB5E
|
41-50
|
Male
|
GTEX-YB5E-1426 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, up to 8x5mm; all muscularis, a few aliquots have ~1mm nubbins adherent fat, delineated
|
Acceptable
|
 |
GTEX-YB5E
|
41-50
|
Male
|
GTEX-YB5E-1526 |
Ileum
|
PAXgene |
1
|
6 pieces, up to 10x2mm; mainly mucosa, ~5% lymphoid follicles
|
Acceptable
|
 |
GTEX-YB5E
|
41-50
|
Male
|
GTEX-YB5E-1626 |
Colon, transverse
|
PAXgene |
1
|
1 piece, 13x875.6um; 40-60% mucosa, reasonably well-preserved
|
Acceptable
|
 |
GTEX-YB5E
|
41-50
|
Male
|
GTEX-YB5E-1726 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 14x12.5x13x12mm; fibrous tisssue is ~40% intermingled (delineated), no TDLUs (ie, ductal elements)
|
Acceptable
|
 |
GTEX-YB5E
|
41-50
|
Male
|
GTEX-YB5E-1826 |
Prostate
|
PAXgene |
1
|
2 pieces, 15x9 & 16x10mm; prominent glandular hyperplasia
|
Acceptable
|
 |
GTEX-YB5E
|
41-50
|
Male
|
GTEX-YB5E-1926 |
Testis
|
PAXgene |
1
|
2 pieces, 12x9 & 11x8mm; spermatogenesis is present
|
Acceptable
|
 |
GTEX-YB5E
|
41-50
|
Male
|
GTEX-YB5E-2026 |
Skin, leg
|
PAXgene |
0
|
1 piece, 10.5x2mm; squamous epithelium is ~1.5% thickness
|
Acceptable
|
 |
GTEX-YB5E
|
41-50
|
Male
|
GTEX-YB5E-2126 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, 12x9 & 17x10mm; fibrous tissue is ~20% specimen, delineated
|
Acceptable
|
 |
GTEX-YB5E
|
41-50
|
Male
|
GTEX-YB5E-2226 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, 13x11 & 15x8mm; less than ~5% interstitial adipose tissue
|
Acceptable
|
 |
GTEX-YB5E
|
41-50
|
Male
|
GTEX-YB5E-2326 |
Nerve - tibial
|
PAXgene |
0
|
4 pieces, up to ~0.7-1.0, discontinous rim of adherent fat ,rep areas delineated
|
Acceptable
|
 |
GTEX-YB5E
|
41-50
|
Male
|
GTEX-YB5E-2426 |
Artery - tibial
|
PAXgene |
0
|
4 pieces, up to 6x6mm; reasonably clean specimens, discontinuous rims of fibrous tissue, ~0.5mm around all, rep areas delineated
|
Acceptable
|
 |
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0126 |
Heart
|
PAXgene |
1
|
2 pieces. 8x8 & 11x8mm; No extraneous fat
|
Acceptable
|
 |
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0226 |
Atrial appendage
|
PAXgene |
0
|
2 pieces, 10x7 & 13x7mm;
|
Acceptable
|
 |
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0326 |
Aorta
|
PAXgene |
1
|
6 pieces. up to 8x3mm; Fibrofatty adventitia on all up to 1 mm thick. No plaques.
|
Acceptable
|
 |
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0426 |
Coronary artery
|
PAXgene |
1
|
2 pieces. 5x3 & 9x5mm; 90% adipose. Small artery with plaque in one and very small artery in other.
|
Acceptable
|
 |
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0526 |
Thyroid gland
|
PAXgene |
1
|
2 pieces. 8x8 & 9.5x9mm; Well trimmed.
|
Acceptable
|
 |
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0625 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces. up to 9x7mm; Well trimmed muscularis.
|
Acceptable
|
 |
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0725 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces. up to 10x5mm; Well trimmed.
|
Acceptable
|
 |
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0825 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces. up to 10x5mm; Well preserved mucosa. 2 have muscularis propria up to 2 x 3 mm [annotated].
|
Acceptable
|
 |
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0826 |
Esophagus - mucosa
|
PAXgene |
1
|
1 piece. 7x5mm; Well dissected: no muscularis propria.
|
Acceptable
|
 |
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0926 |
Omentum
|
PAXgene |
1
|
2 pieces. 15x9 & 10x10mm; 1 with 1mm lymph nodule [annotated]. Central holes.
|
Acceptable
|
 |
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-1026 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces. up to 10.5x5mm; All have mucosa, 3 with large amounts. TARGET is muscularis propria; discard mucosa.
|
Acceptable
|
 |