GTEX-1ICLY
|
51-60
|
Male
|
GTEX-1ICLY-2026 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces, glomeruli present, tubules moderately autolysis
|
Acceptable
|
|
GTEX-1ICLY
|
51-60
|
Male
|
GTEX-1ICLY-2426 |
Stomach
|
PAXgene |
2
|
6 pieces, mucosa up to ~1mm, moderately advanced autolysis
|
Acceptable
|
|
GTEX-1ICLY
|
51-60
|
Male
|
GTEX-1ICLY-2826 |
Prostate
|
PAXgene |
2
|
2 pieces, glands with moderately advanced autolysis
|
Acceptable
|
|
GTEX-1ICLY
|
51-60
|
Male
|
GTEX-1ICLY-2926 |
Testis
|
PAXgene |
2
|
2 pieces, spermatogenesis is present
|
Acceptable
|
|
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-0526 |
Thyroid gland
|
PAXgene |
2
|
2 pieces; slightly nodular;, generally poor preservation, focally bordering on severe autolysis
|
Acceptable
|
|
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-0926 |
Lung
|
PAXgene |
2
|
2 pieces; areas of moderate fibrosis, alveolar edema and macrophages; large vein occupies 20% of 1 piece
|
Acceptable
|
|
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-1226 |
Gastroesophageal junction
|
PAXgene |
2
|
6 pieces; 4 of 6 pieces have moderate amount of external fibrofatty stroma
|
Acceptable
|
|
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-1526 |
Liver
|
PAXgene |
2
|
2 pieces; severe (50%) perilobular fibrosis consistent with cardiac cirrhosis; moderate macrovesicular steatosis
|
Unacceptable
|
|
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-1826 |
Spleen
|
PAXgene |
2
|
2 pieces; focal congestion
|
Acceptable
|
|
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-1926 |
Adrenal glands
|
PAXgene |
2
|
2 pieces; moderate to severe autolysis; 10% & 20% external fat
|
Acceptable
|
|
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2026 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; tubules & ducts severely autolyzed; glomeruli preserved; moderate interstitial fibrosis; no notable vascular lesions
|
Acceptable
|
|
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2126 |
Stomach
|
PAXgene |
2
|
6 pieces; mucosa severely autolyzed; muscularis moderately autolyzed; specimen of limited value; exogenous crystals (probably medication) in mucosa (arrowed)
|
Acceptable
|
|
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2426 |
Colon, transverse
|
PAXgene |
2
|
6 pieces; mucosa autolyzed, muscularis intact
|
Acceptable
|
|
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2626 |
Prostate
|
PAXgene |
2
|
2 pieces; glands autolyzed; stroma, which is predominant, intact
|
Acceptable
|
|
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2726 |
Brain - cerebellum
|
PAXgene |
2
|
5 fragmented pieces; meninges present [circled]
|
Acceptable
|
|
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2826 |
Brain - cortex
|
PAXgene |
2
|
4 pieces
|
Acceptable
|
|
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2926 |
Pituitary gland
|
PAXgene |
2
|
1 piece; mostly adenohypophysis; 10% is neural [circled]
|
Acceptable
|
|
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-0626 |
Lung
|
PAXgene |
2
|
2 pieces; collapse and congestion, includes some larger vessels/cartilage, sloughed bronchial cells, one piece include pleura (target is 1cm below pleura)
|
Acceptable
|
|
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-1126 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces; epithelium is sloughing, one piece includes small portion of muscularis (not target)
|
Acceptable
|
|
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-1426 |
Gastroesophageal junction
|
PAXgene |
2
|
6 pieces; target muscularis
|
Acceptable
|
|
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-1626 |
Pancreas
|
PAXgene |
2
|
2 pieces; interacinar and interlobar fibrosis, atrophy, islets with variable replacement by amyloid
|
Unacceptable
|
|
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-1926 |
Adrenal glands
|
PAXgene |
2
|
2 pieces; moderately autolyzed with hemorrhage, 1 piece is cortex, 2nd is largely medulla and suggestive of medullary hyperplasia
|
Acceptable
|
|
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-2526 |
Colon, transverse
|
PAXgene |
2
|
6 pieces; full thickness, mucosa is largely autolyzed
|
Acceptable
|
|
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-2726 |
Brain - cerebellum
|
PAXgene |
2
|
4 pieces; mild to moderate autolysis
|
Acceptable
|
|
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-2826 |
Brain - cortex
|
PAXgene |
2
|
4 pieces; questionable increase in glial cells
|
Acceptable
|
|