GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-2626 |
Colon, transverse
|
PAXgene |
3
|
6 pieces. up to 9x4mm; Mucosa delineated in one aliquot, ~10% thickness but badly autolyzed
|
Acceptable
|
 |
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-2726 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces. up to 8x7.5mm; generally all muscularis, focal pigmented histiolcytic aggregate (? tattoo)
|
Acceptable
|
 |
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-2826 |
Prostate
|
PAXgene |
2
|
2 pieces. 8.5x8 & 10x8mm; glands moderately autolyzed; one better preserved (~grade 1) area delineated
|
Acceptable
|
 |
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-2926 |
Brain - cerebellum
|
PAXgene |
1
|
4 pieces. up to 6x4mm; Purkinje cells well visualized, minimal ischemic changes
|
Acceptable
|
 |
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-3026 |
Brain - cortex
|
PAXgene |
1
|
4 pieces. up to 6x6mm;
|
Acceptable
|
 |
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-3126 |
Pituitary gland
|
PAXgene |
1
|
1 piece. 8x6mm; ~50% neurohypophysis, delineated
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0126 |
Heart
|
PAXgene |
1
|
2 pieces ~9x6mm. No ischemic changes
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0226 |
Atrial appendage
|
PAXgene |
1
|
2 pieces ~9x7mm
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0326 |
Aorta
|
PAXgene |
1
|
6 pieces, ~9x2mm, 4 of 6 with adherent fat/vasa vasorum up to 2mm thick
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0426 |
Coronary artery
|
PAXgene |
1
|
2 pieces, one distorted ~3mm d with adherent nubbins fat/fibrous tissue up to 2x5mm
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0526 |
Esophagus - mucosa
|
PAXgene |
1
|
2pieces fibroadipose tissue, uncertain provenance.
|
Unacceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0626 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, With 5-10% adherent squamous mucosa
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0726 |
Stomach
|
PAXgene |
1
|
6 pieces ~5x5mm, mainly muscularis, mucosa sloughed, focally present, delineated, where present, well-preserved
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0826 |
Omentum
|
PAXgene |
1
|
2 pieces ~9x6mm
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0926 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces ~7x4mm, up to 20% adherent gastric cardiac mucosa, rep areas delineated. Can be retained, focus should be on muscularis only. Sample with caution
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1026 |
Ileum
|
PAXgene |
1
|
6 pieces ~6x5mm, 2 with abundant lymphoid elements, delineated, rest with tract, largely muscle and/or mucosa
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1126 |
Colon, transverse
|
PAXgene |
1
|
6 pieces ~6x4mm, 5 with mucosa, well preserved, up to 15% thickness
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1226 |
Lung
|
PAXgene |
1
|
2 pieces, 10x7mm, patchy acute pneumonita/chronic pneumonitis, rep areas delineated
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1326 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, ~7x4mm, up to ~50% muscularis in 5 sections, one with no muscle
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1426 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces ~9x9mm, fibroadipose tissue, no ductal elements noted
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1526 |
Prostate
|
PAXgene |
1
|
2 pieces ~9x7mm, mainly fibromuscular stroma, one focal area glandular elements, ~1mm, encircled
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1626 |
Testis
|
PAXgene |
1
|
2 pieces /`9x6mm, spermatogenesis is present
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1726 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces ~6x5mm, squamous epithelium is ~1% thickness
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1826 |
Skin, leg
|
PAXgene |
0
|
6 pieces ~8x4mm, squamous epithelium is ~1-2% thickness
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1926 |
Adipose tissue
|
PAXgene |
0
|
2 pieces ~8x2mm
|
Acceptable
|
 |