GTEX-139TU
|
61-70
|
Male
|
GTEX-139TU-2326 |
Ileum
|
PAXgene |
3
|
5 pieces; fragments of muscularis (not target) and autolyzed mucosa with no significant lymphoid tissue
|
Unacceptable
|
 |
GTEX-139TU
|
61-70
|
Male
|
GTEX-139TU-2426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; muscularis and moderately to severely autolyzed mucosa
|
Acceptable
|
 |
GTEX-139UC
|
61-70
|
Male
|
GTEX-139UC-1526 |
Pancreas
|
PAXgene |
3
|
2 pieces modeate-severe autolysis, saponification
|
Acceptable
|
 |
GTEX-139UC
|
61-70
|
Male
|
GTEX-139UC-1626 |
Kidney - cortex
|
PAXgene |
3
|
6 pieces, glomeruli present but markedly autolyzed
|
Acceptable
|
 |
GTEX-139UC
|
61-70
|
Male
|
GTEX-139UC-1926 |
Prostate
|
PAXgene |
3
|
2 pieces, glandular elements autolyzed
|
Acceptable
|
 |
GTEX-139UC
|
61-70
|
Male
|
GTEX-139UC-2126 |
Ileum
|
PAXgene |
3
|
6 pieces, mucsoa autolyzed, lymphoid/Peyer aggregates are !20% total tissue, delineated
|
Acceptable
|
 |
GTEX-139UC
|
61-70
|
Male
|
GTEX-139UC-2426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, mucosa totally autolyzed (glandular elements)
|
Acceptable
|
 |
GTEX-139UW
|
61-70
|
Male
|
GTEX-139UW-1426 |
Ileum
|
PAXgene |
3
|
4 pieces; 2 large foci of lymphoid cells [annotated]; remaining mucosa autolyzed; well dissected
|
Acceptable
|
 |
GTEX-139UW
|
61-70
|
Male
|
GTEX-139UW-2026 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; mucosa =3, autolyzed; muscularis =1
|
Acceptable
|
 |
GTEX-13CF2
|
61-70
|
Male
|
GTEX-13CF2-0826 |
Spleen
|
PAXgene |
3
|
2 pieces, marked congestion
|
Acceptable
|
 |
GTEX-13CF2
|
61-70
|
Male
|
GTEX-13CF2-0926 |
Kidney - cortex
|
PAXgene |
3
|
6 pieces, glomeruli present, badly autolyzed
|
Acceptable
|
 |
GTEX-13CF2
|
61-70
|
Male
|
GTEX-13CF2-1026 |
Pancreas
|
PAXgene |
3
|
1 piece, severely autolyzed/saponified.
|
Acceptable
|
 |
GTEX-13CF2
|
61-70
|
Male
|
GTEX-13CF2-1126 |
Ileum
|
PAXgene |
3
|
6 pieces, glandular portion of mucosa completely autolyzed; residucal lympoid aggregates are ~25% total tissue
|
Acceptable
|
 |
GTEX-13CF2
|
61-70
|
Male
|
GTEX-13CF2-1326 |
Esophagus - mucosa
|
PAXgene |
3
|
6 pieces, squamous mucosa unusually significantly autolyzed, residucal foci are ~0.1mm, largely sloughed
|
Acceptable
|
 |
GTEX-13CF2
|
61-70
|
Male
|
GTEX-13CF2-1726 |
Prostate
|
PAXgene |
3
|
2 pieces, glandular component badly autolyzed
|
Acceptable
|
 |
GTEX-13CF2
|
61-70
|
Male
|
GTEX-13CF2-1826 |
Colon, sigmoid
|
PAXgene |
3
|
6 pieces, ~10% 'contaminant' totally autolyzed mucosa
|
Acceptable
|
 |
GTEX-13CF2
|
61-70
|
Male
|
GTEX-13CF2-1926 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, mucosa up to ~0.2mm thick, badly autolyzed/sloughed
|
Acceptable
|
 |
GTEX-13CIG
|
51-60
|
Male
|
GTEX-13CIG-1726 |
Pancreas
|
PAXgene |
3
|
2 pieces; extensive autolysis
|
Unacceptable
|
 |
GTEX-13CIG
|
51-60
|
Male
|
GTEX-13CIG-1926 |
Esophagus - mucosa
|
PAXgene |
3
|
6 pieces; epithelium largely sloughed; muscularis propria [not target] sampled on 2 of 6 [annotated]
|
Unacceptable
|
 |
GTEX-13CIG
|
51-60
|
Male
|
GTEX-13CIG-2126 |
Stomach
|
PAXgene |
3
|
6 pieces; totally autolyzed
|
Unacceptable
|
 |
GTEX-13CIG
|
51-60
|
Male
|
GTEX-13CIG-2226 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; mucosa autolyzed, muscularis preserved
|
Acceptable
|
 |
GTEX-13CIG
|
51-60
|
Male
|
GTEX-13CIG-2626 |
Prostate
|
PAXgene |
3
|
2 pieces; glands autolyzed, stroma preserved
|
Acceptable
|
 |
GTEX-13CZV
|
61-70
|
Male
|
GTEX-13CZV-1626 |
Pancreas
|
PAXgene |
3
|
2 pieces; 10 & 20% internal fat; nuclei preserved better than cytoplasm
|
Acceptable
|
 |
GTEX-13CZV
|
61-70
|
Male
|
GTEX-13CZV-2026 |
Esophagus - mucosa
|
PAXgene |
3
|
6 pieces; too autolyzed, surface sloughed
|
Unacceptable
|
 |
GTEX-13CZV
|
61-70
|
Male
|
GTEX-13CZV-2226 |
Prostate
|
PAXgene |
3
|
2 pieces; glands = 3; fibromuscular stroma = 1
|
Acceptable
|
 |