GTEX-1LVAM
|
41-50
|
Female
|
GTEX-1LVAM-0926 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 pieces, fibrocystic changes; lobular/ductal elements present, rep delineated
|
Acceptable
|
|
GTEX-1LVAM
|
41-50
|
Female
|
GTEX-1LVAM-1026 |
Omentum
|
PAXgene |
1
|
2 pieces, ~10% fascia/vascular elements, rep delineated
|
Acceptable
|
|
GTEX-1LVAM
|
41-50
|
Female
|
GTEX-1LVAM-1126 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, squamous mucosa up to ~0.5mm, ~20-30% thickness
|
Acceptable
|
|
GTEX-1LVAM
|
41-50
|
Female
|
GTEX-1LVAM-1226 |
Esophagus - muscularis
|
PAXgene |
0
|
6 pieces, confirmed target muscularis
|
Acceptable
|
|
GTEX-1LVAM
|
41-50
|
Female
|
GTEX-1LVAM-1326 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, confirmed target muscularis; adherent serosal nubbins up to ~1.5mm
|
Acceptable
|
|
GTEX-1LVAM
|
41-50
|
Female
|
GTEX-1LVAM-1426 |
Stomach
|
PAXgene |
1
|
6 pieces, well-preserved target mucosa up to ~1mm, ~20% thickness
|
Acceptable
|
|
GTEX-1LVAM
|
41-50
|
Female
|
GTEX-1LVAM-1526 |
Ileum
|
PAXgene |
1
|
6 pieces, muscularis, no target mucosa or lymphoid aggregates
|
Unacceptable
|
|
GTEX-1LVAM
|
41-50
|
Female
|
GTEX-1LVAM-1626 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, target mucosa up to ~0.4mm, ~15% thickness
|
Acceptable
|
|
GTEX-1LVAM
|
41-50
|
Female
|
GTEX-1LVAM-1726 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, trace adherent serosa or 'contaminant' autolyzed mucosa, rep delineated
|
Acceptable
|
|
GTEX-1LVAM
|
41-50
|
Female
|
GTEX-1LVAM-1826 |
Ovary
|
PAXgene |
1
|
2 pieces, post menopausal atrophy, normal stroma
|
Acceptable
|
|
GTEX-1LVAM
|
41-50
|
Female
|
GTEX-1LVAM-1926 |
Vagina
|
PAXgene |
0
|
6 pieces, squamous mucosa up to ~0.25mm
|
Acceptable
|
|
GTEX-1LVAM
|
41-50
|
Female
|
GTEX-1LVAM-2026 |
Uterus
|
PAXgene |
1
|
2 pieces, mainly myometrium; focal inactive/basalis endometrium, foci up to ~0.6mm, delineated
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0126 |
Spleen
|
PAXgene |
0
|
2 pieces; both include portion of capsule (target is 5mm below capsule)
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0226 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces; well trimmed, few include trivial component of fat (<10%)
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0326 |
Thyroid gland
|
PAXgene |
1
|
2 pieces; vague/early nodularity, focal cystic change
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0426 |
Omentum
|
PAXgene |
1
|
2 pieces; mature adipose tissue, small (<10%) component of nerve and vessels
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0526 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; target muscularis, residual attached fat/vessels on 4 of 6
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0626 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces; target muscularis
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0726 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0826 |
Stomach
|
PAXgene |
2
|
6 pieces; full thickness sections; mild gastritis
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0926 |
Pancreas
|
PAXgene |
1
|
2 pieces; both include internal and attached fat, up to 50% in one piece, mild fibrosis
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1026 |
Heart
|
PAXgene |
1
|
2 pieces; interstitial and focal patchy fibrosis
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1126 |
Coronary artery
|
PAXgene |
1
|
2 pieces; one is disrupted due to calcific atherosclerosis, 2nd is 25-50% occluded with plaque and has partial rim of fat (1.5mm)
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1226 |
Skin, leg
|
PAXgene |
1
|
6 pieces; includes up to ~10% attached and internal fat, epidermis measures
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1326 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces; both include ~20 internal fat
|
Acceptable
|
|