GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-2326 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, 11x7 & 10x9mm; ~10% interstital fat, rep area delineated
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-2426 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, 4.5x3 & 4x3mm; good clean specimens
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-0126 |
Spleen
|
PAXgene |
2
|
2 pieces, 11x11 & 11x10mm;
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-0226 |
Adrenal glands
|
PAXgene |
1
|
3 pieces, up to 10x6mm;
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-0326 |
Liver
|
PAXgene |
1
|
2 pieces, 11x10 & 10x9mm. Moderate portal lymphoid infiltrates consistent with chronic hepatitis or chronic biliary tract disease. No steatosis.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-0426 |
Pancreas
|
PAXgene |
1
|
2 pieces, 11x10 & 11x9mm. 30% internal and external adipose.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-0526 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, 15x9 & 10x9mm. Multinodular goitre with regressive changes (fibrous bands).
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-0626 |
Lung
|
PAXgene |
1
|
2 pieces, 10x8 & 10x8mm. Panacinar emphysema. Carbon deposits.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-0726 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 11x3mm. Well trimmed. No plaques.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-0826 |
Heart
|
PAXgene |
1
|
2 pieces, 11x8 & 10x8mm. 2x3 mm artifactual defect in 1 piece.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-0926 |
Coronary artery
|
PAXgene |
1
|
2 pieces, 6x4 & 4x3.5mm. 1 well trimmed, 1 with up to 1.5 mm external adipose. Moderate eccentric plaque but wide lumen.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-1026 |
Atrial appendage
|
PAXgene |
0
|
2 pieces, 14.5x9 & 11.5x9mm. 1 well trimmed; 1 with 30% adipose
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-1126 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 8x2mm. Well dissected; some mechanical disruption.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-1226 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, up to 6x4mm. Well dissected.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-1326 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, up to 8x3mm. 1 piece 60% fibroadipose stroma; others are largely muscle (target)
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-1426 |
Stomach
|
PAXgene |
2
|
6 pieces, up to 8x2mm. All have mucosa and submucosa, no muscularis propria. One piece with small focus of chronic gastritis with intestinal metaplasia (annotated). Autolysis varies from 1 to 2.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-1526 |
Omentum
|
PAXgene |
1
|
2 pieces, 12x6 & 12x10mm. 1 well fixed, other with large central holes.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-1626 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces, up to 10x4mm. Well trimmed.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-1726 |
Ileum
|
PAXgene |
2
|
6 pieces, up to 10x2mm. Several small lymphoid nodules (marked). All pieces have muscularis propria.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-1826 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, up to 11x2mm. All have only mucosa-submucosa; transverse colon should contain muscularis propria.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-1926 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, up to 8x4mm. All have targeted muscularis. Two small extraneous mucosal pieces are marked.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-2026 |
Ovary
|
PAXgene |
0
|
2 pieces, 11x9 & 12.5x11mm. Numerous corpora albicantia.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-2126 |
Uterus
|
PAXgene |
1
|
2 pieces, 9x8 and 8x8mm. All myometrium in these cuts, no endometrium.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-2226 |
Vagina
|
PAXgene |
1
|
6 pieces, up to 12x5mm. 1 with minimal epithelium.
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-2326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 13x12 & 13x11mm. Scattered small collections of ducts and lobules. Large central (adipose?) empty, unfixed.
|
Acceptable
|
|