GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-0526 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, up to 8x6mm; adherent serosa ~2mm nubbins on most sections, otherwise all muscularis; good specimens
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-0626 |
Lung
|
PAXgene |
1
|
2 pieces, 7x6 & 8x7.5mm; minimal edema; good specimens
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-0726 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 8.5x3mm; adherent serosa/vasa vasorum in 3 ~0.5mm thick
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-0826 |
Stomach
|
PAXgene |
1
|
6 pieces, up to 12x5mm; mucosa well preserved, ~30% total tissue
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-0926 |
Heart
|
PAXgene |
1
|
2 pieces, 10x9 & 12x10mm; minimal fibrosis
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-1026 |
Ileum
|
PAXgene |
1
|
6 pieces, up to 8x6mm; rare lymphoid aggregates, delineated
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-1126 |
Liver
|
PAXgene |
1
|
2 pieces, 8x8 & 8x7mm; mild mixed micro/macrovesicular steatosis, diffuse
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-1226 |
Prostate
|
PAXgene |
1
|
2 pieces, 12x10 & 11x8mm; mainly stromal hyperplasia; 20% of one section with glandular elements
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-1326 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, 11.5x10 & 12x8.5mm; rim of fat/small vessels up to ~1mm thick on one section
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-1426 |
Omentum
|
PAXgene |
1
|
2 pieces, 14x7 & 11.5x6mm;
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-1526 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 8.5x5 & 8x5mm; both ~40-50% fibrous tissue; no ductal elements seen
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-1626 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces, up to 8x4mm; squamous epithelium is 2-2.5% thickness
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-1726 |
Pancreas
|
PAXgene |
1
|
2 pieces, 9x8 & 10x9mm; extremely well preserved, minimal fat, Islets well visualized; representative ones delineated
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-1826 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, up to 8x3mm; generally all muscularis, adherent fat/serosa on 3/6
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-1926 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 9x6mm; mainly muscularis and fat, less than 3% mucosa, well preserved, delineated
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-2026 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, 10x6 & 10x9mm; 4x2.5mm focus of fat in one section
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-2126 |
Testis
|
PAXgene |
1
|
2 pieces, 10x8 & 9x7mm; spermatogenesis is present, variably preserved (score 1--2)
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-2226 |
Skin, leg
|
PAXgene |
0
|
6 pieces, up to 8x4mm; squamous epithelium is ~2.5-3% thickness. Solar elastosis of papillary dermis
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-2326 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, 11x6 & 9.5x8mm; one with 5x3mm focus of atrophy/scar with interstitial fat, ~25% of one section
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-2426 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, 9x8 & 11x8mm; embedded ~0.5mm vessel, foci of fibrous tissue
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-2526 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, 4x3 & 5x4mm; both with rim of adherent fat up to 0.5mm, delineated
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-2626 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, 5x2 & 3x3mm; both are aggregates of smaller artery branches, one with 2.5x1mm aggregate of interstitial fat and small peripheral nerve, delineated. Sample with caution
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-0126 |
Spleen
|
PAXgene |
2
|
2 pieces, 13x8.5 & 11x10mm; moderately congested; capsule present
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-0226 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, 14x12 & 11x10mm; muscle content <50% in one due to fibroadipose interstitium; muscle 70% in other
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-0326 |
Liver
|
PAXgene |
1
|
2 pieces, 8x7.5 & 9.5x9mm; cirrhosis with severe macrovesicular steatosis
|
Acceptable
|
|