GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-1226 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, up to 9x3mm; all muscularis, good specimens
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-1326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 10x9 & 8x8mm; focal skeletal muscle in both aliquots up to ~2x1mm, delineated
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-1426 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces, up to 8x5mm; squamous epithelium is ~1-2% thickness
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-1526 |
Skin, leg
|
PAXgene |
1
|
6 pieces, up to 7x4mm; squamous epithelium is ~1-2% thickness
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-1626 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 9.5x8 & 8x7mm;
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-1726 |
Adrenal glands
|
PAXgene |
2
|
2 pieces, 11x4 & 12x5mm; all cortex, discontinuous rim of adherent fat on both, up to ~0.5-1mm thick, delineated
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-1826 |
Spleen
|
PAXgene |
3
|
2 pieces, 9x8 & 10x8mm; badly autolyzed, congested
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-1926 |
Pancreas
|
PAXgene |
2
|
2 pieces, 8x8 & 9x7mm; moderate saponification, some Islets visible, rep. ones delineated
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2026 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces, up to 8x4mm; glomeruli visible
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2126 |
Liver
|
PAXgene |
2
|
2 pieces, 9x7 & 9x9mm; no steatosis
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2226 |
Ileum
|
PAXgene |
3
|
5 pieces, up to 7x3mm; mucosa autolyzed, abundant lymphoid elements, rep. areas delineated, ~50-60% of specimens
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2326 |
Stomach
|
PAXgene |
2
|
6 pieces, up to 9x2mm; mucosa prservation ranges from score 1 to score 2 ~30--40% thickness
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2426 |
Omentum
|
PAXgene |
1
|
2 pieces, 11x7 & 10x9mm; incidental 05mm lymph node present, encircled
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2526 |
Prostate
|
PAXgene |
2
|
2 pieces, 8x7 & 10x9mm; all stroma
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2626 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 8.5x2mm; mucosa badly autolyzed, sloughed
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2726 |
Testis
|
PAXgene |
2
|
2 pieces, 6x5 & 7x4.5mm; spermatogenesis is present; badly autolyzed
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2826 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, up to 7x2mm; ~50% target muscularis present, rest is fat/stroma, rep target tissue delineated
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0126 |
Heart
|
PAXgene |
1
|
2 pieces, 9x6 & 7x7mm; no adipose
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0226 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, 7x7 & 11x6mm; up to 0.4mm external adipose focally
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0326 |
Coronary artery
|
PAXgene |
1
|
2 pieces, 4x3 & 3x2mm; moderate eccentric atheromatous plaques; up to 0.4 mm external adipose
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0426 |
Skin, leg
|
PAXgene |
1
|
6 pieces, up to 8x2.5mm; 1 piece without epidermis (in this cut). most subcutaneous adipose trimmed
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0526 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, 9x8 & 9x8mm; no unfixed center; 1 piece has 20% loose fibrous stroma centrally
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0626 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, 10x8 & 11x7.5mm; well trimmed, but 10-20% internal adipose
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0726 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, 6x3 & 5x3mm; up to 0.6 mm external adipose
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0826 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, 3x2.5 & 3x2mm; well trimmed, no lesions
|
Acceptable
|
|