NIH, National Cancer Institute, Division of Cancer Treatment and Diagnosis (DCTD) NIH - National Institutes of Health National Cancer Institute DCTD - Division of Cancer Treatment and Diagnosis

GTEx Histological Images

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Case ID Age Gender Specimen ID Tissue Type Fixative Autolysis Pathology Review Comments Acceptability Action
GTEX-1NUQO 21-40 Female GTEX-1NUQO-0726 Muscle, skeletal PAXgene 2 2 pieces; mild to moderat autolysis; generalized atrophy; one contains ~15% internal/external fat, fibromuscular component and empty spaces (arrows) Acceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-0826 Pancreas PAXgene 1 2 pieces; essentially well preserved parenchyma; Langerhans islets present (rep outlined); attached dense fibrous tissue with ductal structures and fibroadipose tissue with nerves (arrows) Acceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-0926 Thyroid gland PAXgene 1 2 pieces; mild to moderate autolysis; 40% and 30% attached skeletal muscle and fibroadipose tissue (outlined) Acceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-1026 Lung PAXgene 2 2 pieces; collapsed alveolar spaces and congestion; bronchus and bronchioles filled with mucus (rep outlined); larger vessels (arrows) Acceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-1126 Esophagus - mucosa PAXgene 1 6 pieces; stratified squamous epithelium, submucosa with couple of glands (outlined) and muscularis Acceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-1226 Esophagus - muscularis PAXgene 1 6 pieces; target muscularis persent Acceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-1326 Colon, transverse PAXgene 2 6 pieces; moderate to severe autolysis of colonic mucosa; muscularis preserved; up to 1.6mm attached serosa Acceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-1426 Ileum PAXgene 2 6 pieces; 3 pieces mostly muscularis, not target; moderate to severe autolysis of mucosa; residual lymphoid aggregates (outlined) are ~ 10 % of tissue Unacceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-1526 Omentum PAXgene 1 2 pieces; lobulated mature adipose tissue with some fibrovascular component Acceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-1626 Gastroesophageal junction PAXgene 1 6 pieces; confirmed target muscularis and up to 1.5mm serosa with focal skeletal muscle fibers (outlined) Acceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-1726 Ovary PAXgene 1 2 pieces; many follicles, corpora albicanta and lutea in different stages of development Acceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-1826 Vagina PAXgene 1 6 pieces; one piece completely devoid of squamous epithelium; well preserved lamina propria Acceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-1926 Uterus PAXgene 1 2 pieces; mostly parametrium with prominent thick walled vessels; no target endometrium or myometrium present Unacceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-2026 Skin, suprapubic PAXgene 1 6 pieces; hair bearing skin with mild to moderate autolysis; 20% to 50% external fat (outlined) Acceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-2126 Minor salivary glands PAXgene 1 2 pieces; mostly skeletal muscle fibers, nerves and fibrovascular tissue with focal small fragment of squamous epithelium; no target tissue observed Unacceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-2226 Mammary tissue (breast) PAXgene 1 2 pieces; 50% and 5% adipose tissue; closely packed acini consistent with lactating breast Acceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-2326 Colon, sigmoid PAXgene 3 6 pieces; severely autolyzed mucosa and lack of good representation of target muscularis Unacceptable View Image
GTEX-1NUQO 21-40 Female GTEX-1NUQO-2426 Stomach PAXgene 1 6 pieces; mild to moderate autolysis of gastric mucosa; well preserved muscularis Acceptable View Image
GTEX-1OJC3 21-40 Male GTEX-1OJC3-0126 Skin, leg PAXgene 1 6 pieces; ; epidermis ~41 microns thick; 5% to 20% of periadnexal (internal) fat; a few hair follicles Acceptable View Image
GTEX-1OJC3 21-40 Male GTEX-1OJC3-0226 Adipose tissue PAXgene 1 2 pieces; lobulated mature adipose tissue; ~30% fibrous septa with vessels and nerves Acceptable View Image
GTEX-1OJC3 21-40 Male GTEX-1OJC3-0326 Muscle, skeletal PAXgene 1 2 pieces; well trimmed skeletal muscle fibers Acceptable View Image
GTEX-1OJC3 21-40 Male GTEX-1OJC3-0426 Nerve - tibial PAXgene 1 2 pieces; 15% and 5% external fat Acceptable View Image
GTEX-1OJC3 21-40 Male GTEX-1OJC3-0526 Artery - tibial PAXgene 1 2 pieces; ~0.25mm rim of adventitia Acceptable View Image
GTEX-1OJC3 21-40 Male GTEX-1OJC3-0626 Thyroid gland PAXgene 1 2 pieces; mild to moderate autolysis; interstitial fibrosis with lobulation Acceptable View Image
GTEX-1OJC3 21-40 Male GTEX-1OJC3-0726 Lung PAXgene 1 2 pieces; mild to focally moderate autolysis; bronchioles and alveoli filled with hemosiderinophages (rep arrowed); collapsed alveolar spaces (atelectasis) Acceptable View Image