GTEX-TMMY
|
41-50
|
Female
|
GTEX-TMMY-1826 |
Fallopian tube
|
PAXgene |
1
|
2 pieces ~2.5mm d. Lumina less than 10% of average diameter, probably proximal/infundibular origin
|
Acceptable
|
 |
GTEX-TMMY
|
41-50
|
Female
|
GTEX-TMMY-1926 |
Vagina
|
PAXgene |
1
|
6 pieces ~5x5mm. Squamous mucosa is ~3-5% of thickness
|
Acceptable
|
 |
GTEX-TMMY
|
41-50
|
Female
|
GTEX-TMMY-2026 |
Cervix - ectocervix
|
PAXgene |
1
|
4 pieces, ~4x4mm. Only one with significant ectocervical squamous mucosa, ~5% of thickness, ensquared
|
Acceptable
|
 |
GTEX-TMMY
|
41-50
|
Female
|
GTEX-TMMY-2126 |
Cervix - endocervix
|
PAXgene |
1
|
4 pieces ~4x3mm. Few minute endocervical glands noted, encircled
|
Acceptable
|
 |
GTEX-TMMY
|
41-50
|
Female
|
GTEX-TMMY-2226 |
Uterus
|
PAXgene |
1
|
2 pieces ~7x7mm. All myometrium; no endometrial elements noted
|
Acceptable
|
 |
GTEX-TMMY
|
41-50
|
Female
|
GTEX-TMMY-2326 |
Colon, transverse
|
PAXgene |
1
|
6 pieces ~6x2.5mm. Mucosa unusually well-preserved, ~15-20% of thickness
|
Acceptable
|
 |
GTEX-TMZS
|
61-70
|
Male
|
GTEX-TMZS-0126 |
Skin, leg
|
PAXgene |
0
|
6 pieces up to 10x3 mm; well trimmed of subcutaneous adipose
|
Acceptable
|
 |
GTEX-TMZS
|
61-70
|
Male
|
GTEX-TMZS-0226 |
Adipose tissue
|
PAXgene |
0
|
2 pieces 13x6 & 11x8 mm; central holes in large aliquots
|
Acceptable
|
 |
GTEX-TMZS
|
61-70
|
Male
|
GTEX-TMZS-0326 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces 10x9 & 8x5 mm; ~20% interspersed adipose in smaller aliquot, <5% in larger; no obvious atrophy
|
Acceptable
|
 |
GTEX-TMZS
|
61-70
|
Male
|
GTEX-TMZS-0426 |
Artery - tibial
|
PAXgene |
0
|
2 pieces 9x4 & 8x5 mm; Organized recanalized thrombus occupies entire lumen and ~50% of aliquot; calcium ~30%, little normal arterial wall in one aliquot; other has little normal wall as well with large recent thrombus and mural calcium. No patent lumen in either. (See photo)
|
Acceptable
|
 |
GTEX-TMZS
|
61-70
|
Male
|
GTEX-TMZS-0526 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces 8x3 & 4x4 mm; TENDON, not nerve
|
Unacceptable
|
 |
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-0126 |
Skin, leg
|
PAXgene |
1
|
6 pieces up to 7x3 mm; 0.5 mm subcutaneous adipose on three pieces
|
Acceptable
|
 |
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-0226 |
Adipose tissue
|
PAXgene |
1
|
2 pieces 9x5 & 7x6 mm; ~30% fibrous tissue in 1 and ~10% nerves & artery in other; no artifacts
|
Acceptable
|
 |
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-0326 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces 6x4 & 6x4 mm; ~10% adipose at periphery of each
|
Acceptable
|
 |
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-0426 |
Artery - tibial
|
PAXgene |
1
|
2 pieces 2x1.5 mm each; small vein at edge of one
|
Acceptable
|
 |
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-0526 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces 9x4 & 7x5 mm; <10% internal adipose
|
Acceptable
|
 |
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-0626 |
Thyroid gland
|
PAXgene |
1
|
2 pieces 9x7 & 7x6 mm; small foci of lymphoid cells
|
Acceptable
|
 |
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-0726 |
Lung
|
PAXgene |
1
|
2 pieces 9x7 & 8x7 mm; moderate alveolar hemorrhages; moderate interstitial fibrosis; no pneumonia or heart failure cells
|
Acceptable
|
 |
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-0826 |
Coronary artery
|
PAXgene |
1
|
2 pieces, 3.7 & 3 mm arteries with extensive calcified atheromatous eccentric plaques occluding ~ 75% of the lumens; ~10% peripheral adipose
|
Acceptable
|
 |
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-0926 |
Heart
|
PAXgene |
1
|
2 pieces 9x7 & 8x5 mm; moderate diffuse interstitial fibrosis; hypertrophied nuclei
|
Acceptable
|
 |
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-1026 |
Aorta
|
PAXgene |
1
|
6 pieces up to 9x1.3 mm; clean adventitia, minimal plaque
|
Acceptable
|
 |
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-1126 |
Liver
|
PAXgene |
2
|
2 pieces 8x7 & 7x7 mm; moderate sinusoidal congestion; fibrovascular area 4.7x1.8 mm at center of one piece
|
Acceptable
|
 |
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-1226 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces up to 6.6x1 mm; focal epithelial sloughing
|
Acceptable
|
 |
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-1326 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces up to 7x3 mm; clean adventitia
|
Acceptable
|
 |
GTEX-TSE9
|
51-60
|
Female
|
GTEX-TSE9-1426 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces: 8x7 mm with large ducts and fibrous stroma, no lobules; 8x8 mm: all adipose, no lobules
|
Acceptable
|
 |