GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-2426 |
Cervix - endocervix
|
PAXgene |
1
|
4 pieces, ~3.5 x 3.5mm, no mucosal glands
|
Acceptable
|
 |
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-2526 |
Urinary bladder
|
PAXgene |
2
|
6 pieces ~8x2.5mm, urothelium completely sloughed
|
Acceptable
|
 |
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-2626 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces ~11x6mm, minimal interstitial fat
|
Acceptable
|
 |
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-2726 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, ~6x2mm. Mucosa completely autolyzed/sloughed
|
Acceptable
|
 |
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-2826 |
Stomach
|
PAXgene |
2
|
6 pieces, ~8x2.5mm. Mucosa present, moderately autolyzed, ~40-50% of thickness
|
Acceptable
|
 |
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-2926 |
Brain - cerebellum
|
PAXgene |
1
|
4 pieces, ~5x5mm
|
Acceptable
|
 |
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-3026 |
Brain - cortex
|
PAXgene |
1
|
4 pieces, ~4.5x4.5mm
|
Acceptable
|
 |
GTEX-T2IS
|
21-40
|
Female
|
GTEX-T2IS-3126 |
Pituitary gland
|
PAXgene |
1
|
1 piece, ~5x5mm, reasonably well preserved for an endocrine organ
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-0126 |
Testis
|
PAXgene |
2
|
2 pieces 9x5 & 8x6 mm; slightly reduced spermatogenesis
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-0226 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces 10x7 & 8x8 mm; patchy fibrosis; ~40% adipose in aliquots
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-0326 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces 5x3 & 5x4 mm; ~20 & 40% peripheral adipose
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-0426 |
Artery - tibial
|
PAXgene |
1
|
2 pieces 4 mm in diameter; no extraneous adipose
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-0526 |
Skin, leg
|
PAXgene |
1
|
6 pieces up to 8x3.5 mm; subcutaneous adipose up to 0.6mm
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-0626 |
Adipose tissue
|
PAXgene |
1
|
2 pieces 9x8 & 8x7 mm; holes in central 20%
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-0726 |
Thyroid gland
|
PAXgene |
3
|
2 pieces 7x6 & 7x6 mm
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-0826 |
Lung
|
PAXgene |
2
|
2 pieces 8x8 & 8x7 mm; numerous 'heart failure' cells, moderate alveolar dilatation; patchy alveolar hemorrhage
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-0926 |
Heart
|
PAXgene |
2
|
2 pieces 9x4 & 7x7 mm; fiber fracture autolysis artifact
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-1026 |
Aorta
|
PAXgene |
1
|
6 pieces up to 1.5x8 mm; flat plaques up to 0.4mm
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-1126 |
Coronary artery
|
PAXgene |
1
|
2 pieces 2x2 mm; 1 ~80% adipose; other 100% adipose
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-1226 |
Spleen
|
PAXgene |
2
|
2 pieces 8x8 & 10x6 mm; moderate congestion
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-1326 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces up to 7x2 mm; squamous mucosa well preserved; submucosal glands moderately autolyzed
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-1426 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces up to 7x3 mm; 2 have submucosal glands <10% of each aliquot
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-1526 |
Pancreas
|
PAXgene |
3
|
2 pieces 8x8 & 6x6 mm; poor parenchymal preservation and saponification of adjacent fat (~10 and 20% of aliquots
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-1626 |
Adrenal glands
|
PAXgene |
3
|
3 pieces 10x5 & 9x8 mm; ~20% adjacent adipose
|
Acceptable
|
 |
GTEX-T2YK
|
51-60
|
Male
|
GTEX-T2YK-1726 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces up to 7x3 mm; marked arterial and arteriolar sclerosis; tubules autolyzed; moderate interstitial fibrosis; virtually all cortex
|
Acceptable
|
 |