GTEX-WOFL
|
61-70
|
Male
|
GTEX-WOFL-2426 |
Esophagus - mucosa
|
PAXgene |
1
|
5 pieces, up to 6x2mm; glands not well preserved
|
Acceptable
|
 |
GTEX-WOFL
|
61-70
|
Male
|
GTEX-WOFL-2526 |
Ileum
|
PAXgene |
2
|
5 pieces, up to 6x2mm; 2 lymphoid nodules; autolyzed mucosa; all have (UNWANTED muscularis)
|
Acceptable
|
 |
GTEX-WOFL
|
61-70
|
Male
|
GTEX-WOFL-2626 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 7x1.5mm; mucosa = 3, muscle =2 (autolysis).
|
Acceptable
|
 |
GTEX-WOFL
|
61-70
|
Male
|
GTEX-WOFL-2726 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, up to 8x3.5mm; only 1 is free of mucosa, 5 have UNWANTED mucosa; musc=2, mucosa=3 (autolysis)
|
Acceptable
|
 |
GTEX-WOFL
|
61-70
|
Male
|
GTEX-WOFL-2826 |
Skin, suprapubic
|
PAXgene |
2
|
6 pieces, up to 8x3mm; 3 have up to 1.5mm subcutaneous adipose tissue
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0126 |
Lung
|
PAXgene |
1
|
2 pieces ~7x6, one with marked congestion/chronic pneumonitis
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0226 |
Aorta
|
PAXgene |
1
|
6 pieces ~9x1mm, 4 of 6 have adherent fat/vasa vasorum up to 2mm thick, delineated
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0326 |
Prostate
|
PAXgene |
1
|
2 pieces ~11x4mm, one with adherent fat/fibrous nubbin up to 5mm
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0426 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces ~4x3mm 10-15% squamous mucosa, numerous submucosal glands present, representative ones encircled
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0526 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces ~6x5mm, all muscularis, should be labeled as such
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0626 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces ~5x2mm, squamous mucosa is ~20% of thickness. should be labeled mucosa
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0726 |
Omentum
|
PAXgene |
1
|
1 piece ~12x8mm
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0826 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces ~10x5mm. Squamous epithelium is 2-3% of thickness
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-0926 |
Stomach
|
PAXgene |
1
|
6 pieces ~9x5mm. Mucosa remarkably well-preserved ~25% of thickness
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-1026 |
Mammary tissue (breast)
|
PAXgene |
1
|
1 piece ~11x11mm. Single minute focus of ductal elements, encircled
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-1126 |
Testis
|
PAXgene |
1
|
1 piece ~13x10mm. Spermatogenesis is present/within normal limits
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-1226 |
Skin, leg
|
PAXgene |
0
|
6 pieces ~11x4mm. Squmous epithelium is ~2-3% of thickness
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-1326 |
Muscle, skeletal
|
PAXgene |
0
|
1piece ~17x12mm. Minimal interstitial fat
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-1526 |
Adipose tissue
|
PAXgene |
0
|
2 pieces ~12x5mm. "Contaminant' nerve vascular tissue in one up to ~2x1mm, delineated
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-1626 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces ~4mm d. Good clean specimens
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-1726 |
Artery - tibial
|
PAXgene |
0
|
2 pieces ~2mm d. Good clean specimens
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-1826 |
Ileum
|
PAXgene |
2
|
4 pieces ~10% total lymphoid elements, delineated
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-1926 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces ~7x5mm, 60-70% muscularis, rest is fat/mucosa
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-2026 |
Colon, transverse
|
PAXgene |
1
|
6 pieces ~7x4mm, mucosa is ~10% of thickness, well preserved
|
Acceptable
|
 |
GTEX-WOFM
|
21-40
|
Male
|
GTEX-WOFM-2126 |
Minor salivary glands
|
PAXgene |
1
|
3 pieces ~2.5mm, ranging from 30%-90% glandular tissue, delineated; rest is fibrovascular/muscular tissue
|
Acceptable
|
 |