GTEX-S4Z8
|
61-70
|
Male
|
GTEX-S4Z8-1226 |
Stomach
|
PAXgene |
2
|
6 pieces up to 11x5 mm; deep oxyntic mucosa better preserved than surface; varies from piece to piece
|
Acceptable
|
 |
GTEX-S4Z8
|
61-70
|
Male
|
GTEX-S4Z8-1326 |
Urinary bladder
|
PAXgene |
2
|
6 pieces up to 12x6 mm; cassette marking on tissue due to 'snug fit' in cassette; considerable epithelial sloughing
|
Acceptable
|
 |
GTEX-S4Z8
|
61-70
|
Male
|
GTEX-S4Z8-1426 |
Prostate
|
PAXgene |
1
|
2 pieces 12x11 & 10x9 mm; nodular hyperplasia
|
Acceptable
|
 |
GTEX-S4Z8
|
61-70
|
Male
|
GTEX-S4Z8-1526 |
Colon, transverse
|
PAXgene |
1
|
6 pieces up to 11x4 mm;
|
Acceptable
|
 |
GTEX-S4Z8
|
61-70
|
Male
|
GTEX-S4Z8-1626 |
Skin, leg
|
PAXgene |
1
|
6 pieces up to 8x3 mm; 3 pieces have subcutaneous adipose tissue up to 1.8 mm; should have been trimmed
|
Acceptable
|
 |
GTEX-S4Z8
|
61-70
|
Male
|
GTEX-S4Z8-1726 |
Adipose tissue
|
PAXgene |
0
|
2 pieces 10x7 & 8x6 mm; good specimen
|
Acceptable
|
 |
GTEX-S4Z8
|
61-70
|
Male
|
GTEX-S4Z8-1826 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces 12x8 & 9x7 mm; ~25% internal and external adipose
|
Acceptable
|
 |
GTEX-S4Z8
|
61-70
|
Male
|
GTEX-S4Z8-1926 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces ~5x3 mm; clean, no expernal adipose; ~10% internal adipose
|
Acceptable
|
 |
GTEX-S4Z8
|
61-70
|
Male
|
GTEX-S4Z8-2026 |
Artery - tibial
|
PAXgene |
1
|
2 pieces ~2.6 mm; moderate Monckeberg sclerosis; clean, no adipose
|
Acceptable
|
 |
GTEX-S4Z8
|
61-70
|
Male
|
GTEX-S4Z8-2126 |
Testis
|
PAXgene |
1
|
2 pieces 12x7 & 9x8 mm; 5x1 mm capsule along one edge; reduced spermatogenesis
|
Acceptable
|
 |
GTEX-S7PM
|
61-70
|
Male
|
GTEX-S7PM-0126 |
Skin, leg
|
PAXgene |
1
|
6 pieces, ~7x3mm. Squamous mucosa is ~2-3% of thickness
|
Acceptable
|
 |
GTEX-S7PM
|
61-70
|
Male
|
GTEX-S7PM-0226 |
Adipose tissue
|
PAXgene |
1
|
2 aliquots, ~9x9mm
|
Acceptable
|
 |
GTEX-S7PM
|
61-70
|
Male
|
GTEX-S7PM-0326 |
Nerve - tibial
|
PAXgene |
1
|
2 aliquots, ~6x2.5mm. Minimal dicontinuous adhernet fat, up to 0.5mm
|
Acceptable
|
 |
GTEX-S7PM
|
61-70
|
Male
|
GTEX-S7PM-0426 |
Artery - tibial
|
PAXgene |
1
|
2 aliquots, ~2.5mm d. Monckeberg's sclerosis noted; representative foci encircled
|
Acceptable
|
 |
GTEX-S7PM
|
61-70
|
Male
|
GTEX-S7PM-0526 |
Muscle, skeletal
|
PAXgene |
2
|
2 aliquots, ~9x7mm. Minimal interstital fat. Unusually poorly preserved
|
Acceptable
|
 |
GTEX-S7PM
|
61-70
|
Male
|
GTEX-S7PM-0626 |
Testis
|
PAXgene |
3
|
2 aliquots, ~7.5x6mm. probable spermatogenesis, autolysis compromises assessment
|
Acceptable
|
 |
GTEX-S7PM
|
61-70
|
Male
|
GTEX-S7PM-0726 |
Mammary tissue (breast)
|
PAXgene |
2
|
2 alqiuots, ~8x8mm. All adipose, no ductal elements noted.
|
Acceptable
|
 |
GTEX-S7PM
|
61-70
|
Male
|
GTEX-S7PM-0826 |
Thyroid gland
|
PAXgene |
2
|
2 aliquots, ~6x6mm. INCORRECT TISSUE: SKELETAL MUSCLE, UNCERTAIN PROVENANCE.
|
Unacceptable
|
 |
GTEX-S7PM
|
61-70
|
Male
|
GTEX-S7PM-0926 |
Lung
|
PAXgene |
3
|
2 aliquots, ~8x6mm. Probable diffuse congestion, too autolyzed for definitive assessment
|
Acceptable
|
 |
GTEX-S7PM
|
61-70
|
Male
|
GTEX-S7PM-1026 |
Heart
|
PAXgene |
2
|
2 aliquots, ~9x5mm. Confluent foci of remote fibrotic infarcts up to 7x3mm in dimensions, encircled
|
Acceptable
|
 |
GTEX-S7PM
|
61-70
|
Male
|
GTEX-S7PM-1126 |
Liver
|
PAXgene |
2
|
2 aliquots, ~7.5x5mm, diffuse microvesicular steatosis, possible mild chronic hepatitis, but portal tracts badly autolyzed, compromising assessment.
|
Acceptable
|
 |
GTEX-S7PM
|
61-70
|
Male
|
GTEX-S7PM-1226 |
Spleen
|
PAXgene |
3
|
2 aliquots, ~7x6mm Badly autolyzed/congested
|
Acceptable
|
 |
GTEX-S7PM
|
61-70
|
Male
|
GTEX-S7PM-1326 |
Pancreas
|
PAXgene |
3
|
2 aliquots, ~8x7mm. ~20% interstital fat, marked saponification/autolysis
|
Acceptable
|
 |
GTEX-S7PM
|
61-70
|
Male
|
GTEX-S7PM-1426 |
Coronary artery
|
PAXgene |
1
|
2 aliquots, ~2.5mm d., both with discontinuous rim of adherent fat up to 1.1mm, encircled
|
Acceptable
|
 |
GTEX-S7PM
|
61-70
|
Male
|
GTEX-S7PM-1526 |
Adrenal glands
|
PAXgene |
3
|
2 aliquots, ~7x4mm, both ~40%% fat, encircled
|
Acceptable
|
 |