GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-1326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces 9x8 & 13x10 mm; large ducts, no lobules; 80-90% adipose; central unfixed adipose especially in large piece
|
Acceptable
|
 |
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-1426 |
Skin, leg
|
PAXgene |
1
|
6 pieces up to 7x3.8 mm; 5 pieces have up to 1.5 mm subcutaneous adipose
|
Acceptable
|
 |
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-1526 |
Adipose tissue
|
PAXgene |
1
|
2 pieces 15x13 & 13x10 mm; excessively large aliquots with large central unfixed holes
|
Acceptable
|
 |
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-1626 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces 9x9 & 9x5 mm; clean except for a 1 mm nodule of fibroadipose
|
Acceptable
|
 |
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-1726 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces ~5mm in diameter; one with 30% surrounding adipose, other 'clean' ;
|
Acceptable
|
 |
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-1826 |
Artery - tibial
|
PAXgene |
0
|
2 pieces 2 mm artery
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-0126 |
Spleen
|
PAXgene |
1
|
2 aliquots, ~12x8mm
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-0226 |
Adrenal glands
|
PAXgene |
1
|
2 aliquots, 7x6mm. All cortex, well-preserved
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-0326 |
Thyroid gland
|
PAXgene |
0
|
2 aliquots, ~12x8mm. Diffuse Hashimoto's/lymphocytic thyroiditis. Germinal centers encircled.
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-0426 |
Lung
|
PAXgene |
1
|
2 aliquots, ~9x7mm. Diffuse mild chronic active pneumonitis and edema
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-0526 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, ~9x3mm.
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-0626 |
Esophagus - mucosa
|
PAXgene |
0
|
6 pieces, ~7x2mm. Squamous mucosa well preserved, ~15-20% of thickness. Submucosal mucus glands encircled
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-0726 |
Stomach
|
PAXgene |
0
|
6 pieces,~10x2.5mm. Mucosa extremely well preserved, 30-50% of thickness. Basal lymphoid aggregates encircled
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-0826 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, ~9x3mm. Mucosa reasonably well-preserved, ~10% of thickness
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-0926 |
Urinary bladder
|
PAXgene |
1
|
7 pieces, ~7x3.5mm. Urothelium remarkably well-preserved, ~2-3% of thickness
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-1026 |
Prostate
|
PAXgene |
1
|
2 aliquots, ~10x8mm. Glandular epithelium remarkably well-preserved, prominent glandular hyperplasia
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-1126 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 aliquots, ~18x9mm. Male ductal units well-seen in one, examples encircled
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-1226 |
Testis
|
PAXgene |
1
|
2 aliquots, ~12x7mm. Spermatogenesis appears markedly reduced
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-1326 |
Artery - tibial
|
PAXgene |
0
|
2 aliquots, ~4.5mm d. Fairly clean specimens
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-1426 |
Nerve - tibial
|
PAXgene |
0
|
2 aliquots, ~2.5mm d. LDACC NOTE: Rim of fat/fibrous tissue up to ~1mm, discontinuous
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-1526 |
Muscle, skeletal
|
PAXgene |
0
|
2 aliquots, 11x7mm. Minimal interstitial fat.
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-1626 |
Adipose tissue
|
PAXgene |
0
|
2 aliquots, ~10x9mm.
|
Acceptable
|
 |
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-1726 |
Skin, leg
|
PAXgene |
0
|
6 pieces, ~9x4mm. Squamous epithelium is ~2-3% of thickness.
|
Acceptable
|
 |
GTEX-S4UY
|
41-50
|
Female
|
GTEX-S4UY-0126 |
Skin, leg
|
PAXgene |
0
|
6pieces, 6.5x2.5mm, squamous epithelium is ~1-3% of thickness
|
Acceptable
|
 |
GTEX-S4UY
|
41-50
|
Female
|
GTEX-S4UY-0226 |
Adipose tissue
|
PAXgene |
0
|
2 aliquots, 8x6mm
|
Acceptable
|
 |