GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0426 |
Testis
|
PAXgene |
2
|
2 ~8.5x7.5mm aliquots. Leydig cells seem unusually prominent. Spermatogenesis assessment hampered by unusually poor preservation
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0526 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 ~8.5x8mm aliquots; no visible ductal elements. Extreme separation of sections
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0626 |
Lung
|
PAXgene |
1
|
2 ~8.5x8mm aliquots, minimal congestion
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0726 |
Coronary artery
|
PAXgene |
1
|
2 ~3mm d aliquots, ~60% occlusion by atherosclerotis deposits, calcified
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0826 |
Heart
|
PAXgene |
1
|
2 ~7.5x5.5mm aliquots, early ischemic changes (contraction bands)
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0926 |
Aorta
|
PAXgene |
0
|
6 ~7x2mm pieces, several with up to 0.5mm layer of adherent serosal adipose/fibrous tissue
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 ~6x1.5mm pieces. Squamous mucosa is ~10-15% of thickness
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1126 |
Esophagus - muscularis
|
PAXgene |
1
|
6 ~8x3mm pieces
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1226 |
Spleen
|
PAXgene |
2
|
2 ~8.5x6mm aliquots; red pulp markedly congested
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1326 |
Adrenal glands
|
PAXgene |
1
|
2 ~12x3.5mm aliquots. Adherent 1mm layer of fat on both
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1426 |
Kidney - cortex
|
PAXgene |
1
|
6 ~7x3.5mm pieces; glomeruli and tubules reasonably well- preserved
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1526 |
Kidney - cortex
|
PAXgene |
1
|
2 ~7x7mm aliquots; one all cortex, one is 90% cortex and 10% medulla—may be used if reclassified as renal cortex. Glomeruli and tubules reasonably well preserved
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1626 |
Pancreas
|
PAXgene |
1
|
2 ~8x8mm aliquots; one is >80% fat; cannot use as there is no way of knowing which is which in LDACC samples
|
Unacceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1726 |
Muscle, skeletal
|
PAXgene |
0
|
2 ~9x7.5mm aliquots. Interstitial fat ~10% of specimens
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1826 |
Liver
|
PAXgene |
1
|
2 ~8x8mm aliquots, prominent congestion
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1926 |
Stomach
|
PAXgene |
1
|
6 8x2.5mm pieces; mucosa well preserved generally, 20-30% of thickness
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-2026 |
Colon, transverse
|
PAXgene |
2
|
6 ~8x2mm pieces; mucosa is 10-20% of thickness
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-2126 |
Prostate
|
PAXgene |
1
|
2 ~8x8mm aliquots. Prominent glandular hyperplasia; foci of cystic atrophy
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-2226 |
Urinary bladder
|
PAXgene |
1
|
6 ~8.5x4mm pieces; urothelium completely sloughed/denuded
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-2326 |
Skin, leg
|
PAXgene |
0
|
6 ~8.5x2.5mm pieces; squamous epithelium is ~1-3% of thickness
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-2426 |
Adipose tissue
|
PAXgene |
1
|
2 ~8x8mm aliquots
|
Acceptable
|
 |
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-0126 |
Skin, leg
|
PAXgene |
1
|
6 pieces, up to 8x2.5 mm
|
Acceptable
|
 |
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-0226 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 9x7 & 11x 6mm
|
Acceptable
|
 |
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-0326 |
Artery - tibial
|
PAXgene |
1
|
2 calcified arteries, ~2.5 mm diameter; 1 with adjacent nerve; both with adjacent vein
|
Acceptable
|
 |
GTEX-R3RS
|
41-50
|
Female
|
GTEX-R3RS-0426 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces 3.8x3.5 & 5x1.8 mm
|
Acceptable
|
 |