GTEX-1GF9V
|
61-70
|
Male
|
GTEX-1GF9V-1926 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces, glomeruli present, advanced tubular autolysis
|
Acceptable
|
|
GTEX-1GF9V
|
61-70
|
Male
|
GTEX-1GF9V-2326 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces, squamous mucosa up to ~0.2mm, partly sloughing, ~15-20% thickness
|
Acceptable
|
|
GTEX-1GF9V
|
61-70
|
Male
|
GTEX-1GF9V-2826 |
Ileum
|
PAXgene |
2
|
6 pieces, glandular mucosa autolyzed; residual target lymphoid aggregates are ~40% remaining tissue; rep delineated
|
Acceptable
|
|
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-1126 |
Pancreas
|
PAXgene |
2
|
2 pieces; 20% and 10% internal fat; scattered Langerhans islets (rep outlined); small aggregate of lymphocytes (arrow)
|
Acceptable
|
|
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-1226 |
Adrenal glands
|
PAXgene |
2
|
2 pieces; moderate to focally severe autolysis of adrenal cortex; one piece is well trimmed and other has ~15% attached fat
|
Acceptable
|
|
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-1326 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; congestion; focal severe autolysis; rare hyalinized glomeruli (outlined)
|
Acceptable
|
|
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-1526 |
Gastroesophageal junction
|
PAXgene |
2
|
6 pieces; essentially well trimmed muscularis with limited amount of serosa
|
Acceptable
|
|
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-1726 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces; autolyzed squamous epithelium and chronic inflammation in submucosa with scattered small aggregates of lymphocytes
|
Acceptable
|
|
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-1826 |
Stomach
|
PAXgene |
2
|
6 pieces; full thickness sections, muscularis is better preserved
|
Acceptable
|
|
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-2026 |
Prostate
|
PAXgene |
2
|
2 pieces; fibromuscular stroma and largely sloughed glandular component with scattered calcifications (outlined)
|
Acceptable
|
|
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-2126 |
Testis
|
PAXgene |
2
|
2 pieces; decreased spermatogenesis; interstitial fibrosis and sclerosis of tubules (arrows)
|
Acceptable
|
|
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-2326 |
Ileum
|
PAXgene |
2
|
6 pieces; predominantly autolyzed mucosa with some residual target lymphoid aggregates (< 20% of tissue)
|
Unacceptable
|
|
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-2426 |
Colon, transverse
|
PAXgene |
2
|
6 pieces; predominantly muscularis and submucosa with small fragment of autolyzed mucosa (arrow)
|
Unacceptable
|
|
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-2526 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces; full thickness colon (target is muscularis only)
|
Unacceptable
|
|
GTEX-1GMR3
|
21-40
|
Male
|
GTEX-1GMR3-0926 |
Adrenal glands
|
PAXgene |
2
|
2 pieces, all cortex, trace adherent fat, delineated
|
Acceptable
|
|
GTEX-1GMR3
|
21-40
|
Male
|
GTEX-1GMR3-1226 |
Pancreas
|
PAXgene |
2
|
2 pieces, moderate advanced saponification. Islets visible, rep, encircled, early degenerative changes
|
Acceptable
|
|
GTEX-1GMR3
|
21-40
|
Male
|
GTEX-1GMR3-1626 |
Stomach
|
PAXgene |
2
|
6 pieces, target mucosa up to ~1mm, ~30-40% thickness; deeper (basal)mucosa better preserved (score 1)
|
Acceptable
|
|
GTEX-1GMR3
|
21-40
|
Male
|
GTEX-1GMR3-2826 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, target mucosa is ~0.5mm, ~20% thickness; deeper (basal) mucosa better preserved (score 1)
|
Acceptable
|
|
GTEX-1GMR8
|
51-60
|
Female
|
GTEX-1GMR8-1526 |
Liver
|
PAXgene |
2
|
2 pieces; nodular cirrhosis; transplant 2011; hemochromatosis per history
|
Unacceptable
|
|
GTEX-1GMR8
|
51-60
|
Female
|
GTEX-1GMR8-1626 |
Spleen
|
PAXgene |
2
|
2 pieces; slightly congested
|
Acceptable
|
|
GTEX-1GMR8
|
51-60
|
Female
|
GTEX-1GMR8-1726 |
Pancreas
|
PAXgene |
2
|
2 pieces; high islet content (40%); 20% internal fat content
|
Acceptable
|
|
GTEX-1GMR8
|
51-60
|
Female
|
GTEX-1GMR8-1826 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces; 60% epithelium sloughed
|
Acceptable
|
|
GTEX-1GMR8
|
51-60
|
Female
|
GTEX-1GMR8-2226 |
Adrenal glands
|
PAXgene |
2
|
2 pieces; 70% external fibrofatty content in 1, 40% in other (26 black may have been trimmed)
|
Acceptable
|
|
GTEX-1GMR8
|
51-60
|
Female
|
GTEX-1GMR8-2626 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; no active or chronic lesions; tubules autolyzed
|
Acceptable
|
|
GTEX-1GMR8
|
51-60
|
Female
|
GTEX-1GMR8-2726 |
Ileum
|
PAXgene |
2
|
6 pieces; mucosa autolyzed but thin layer of lymphoid cells present on all pieces
|
Acceptable
|
|